BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0469000 Os04g0469000|AK062816
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0469000 Heavy metal transport/detoxification protein d... 159 3e-40
Os04g0464100 Heavy metal transport/detoxification protein d... 124 2e-29
Os02g0584600 86 9e-18
Os04g0469300 Conserved hypothetical protein 75 1e-14
Os02g0584700 Heavy metal transport/detoxification protein d... 70 4e-13
Os02g0584800 Heavy metal transport/detoxification protein d... 69 6e-13
>Os04g0469000 Heavy metal transport/detoxification protein domain containing
protein
Length = 122
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 92/122 (75%)
Query: 1 MKQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLR 60
MKQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLR
Sbjct: 1 MKQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLR 60
Query: 61 KKIGHAELVQVEEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIPVAVGDQPSDPCS 120
KKIGHAELVQVEEV GGIPVAVGDQPSDPCS
Sbjct: 61 KKIGHAELVQVEEVKEKKPEEKKPEEKKPEPCYCPHPCYYHHHYGGIPVAVGDQPSDPCS 120
Query: 121 IM 122
IM
Sbjct: 121 IM 122
>Os04g0464100 Heavy metal transport/detoxification protein domain containing
protein
Length = 118
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 68/74 (91%)
Query: 1 MKQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLR 60
M+QKIVIKVSMPCEKSRSKAM LV ASGV+S+EVTGDGKDRLQVVGDGVD CLV CLR
Sbjct: 1 MQQKIVIKVSMPCEKSRSKAMALVARASGVNSMEVTGDGKDRLQVVGDGVDPVCLVACLR 60
Query: 61 KKIGHAELVQVEEV 74
+KIG+AE+VQVEEV
Sbjct: 61 RKIGYAEIVQVEEV 74
>Os02g0584600
Length = 119
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 2 KQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLRK 61
KQKIVIK++M +K RSKAM LV +GV SV + GDGKD+L VVGDGVD+ L T LRK
Sbjct: 3 KQKIVIKMNMASDKCRSKAMALVASTTGVDSVALAGDGKDQLVVVGDGVDSIELTTALRK 62
Query: 62 KIGHAELVQV 71
K+GHA L+ V
Sbjct: 63 KVGHATLMTV 72
>Os04g0469300 Conserved hypothetical protein
Length = 132
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 1 MKQKIVIKVSMPCEKSRSKAMKLVVMAS-GVSSVEVTGDGKDRLQVVGDGVDAACLVTCL 59
MKQKIVIKV PCE R+KA+++ A+ GV S+ +TGD +D+L+VVG GVD LV CL
Sbjct: 1 MKQKIVIKVCAPCEGCRAKALEVAARAADGVISLAITGDDRDKLEVVGVGVDVTRLVICL 60
Query: 60 RKKIGHAELVQV 71
RKK+ +AE++ V
Sbjct: 61 RKKVCYAEILLV 72
>Os02g0584700 Heavy metal transport/detoxification protein domain containing
protein
Length = 117
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 53/70 (75%)
Query: 2 KQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLRK 61
KQKIVIKV+M +K RSKAM LV SGV SV + GDGKD++ VVGDGVD+ L T LRK
Sbjct: 3 KQKIVIKVNMASDKCRSKAMALVASTSGVDSVALAGDGKDQVVVVGDGVDSIKLTTALRK 62
Query: 62 KIGHAELVQV 71
K+GHA L+ V
Sbjct: 63 KVGHATLMTV 72
>Os02g0584800 Heavy metal transport/detoxification protein domain containing
protein
Length = 121
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 51/70 (72%)
Query: 2 KQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLRK 61
KQKIVIKV M C+K RSKAM LV GV SV + GDGKD++ VVGDGVD+ L LRK
Sbjct: 3 KQKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAGDGKDQVVVVGDGVDSIKLTAALRK 62
Query: 62 KIGHAELVQV 71
K+GHA LV V
Sbjct: 63 KVGHATLVTV 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,932,568
Number of extensions: 78837
Number of successful extensions: 238
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 8
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)