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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0584700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.12 (0.0455) R2 : 0.232
β1 : -1.44 (0.187) R2dD : 0.136 R2D : 0.00807
β2 : 0.649 (0.107) R2dC : 0.0626 R2C : 0.0741
β3 : 1.6 (0.2) R2dE : 0.151 R2E : 0.0411
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0997 (0.103) R2dN8 : 0.00245 R2N8 : -0.0137
σ : 0.834
deviance : 320.71
__
_____
C
peak time of C : 1.21
E
wheather : temperature
threshold : 19.14
memory length : 2102
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.47 0.832 5.18 -1.71 0.669 1.18 -0.439 -1.94 -0.16 1.41 19.3 2073 -- --
319.52 0.833 5.12 -1.45 0.655 1.6 -0.583 -- -0.103 1.44 19.1 2097 -- --
314.09 0.825 5.18 -1.71 0.663 1.16 -- -2.03 -0.16 1.15 19.3 2103 -- --
320.71 0.834 5.12 -1.44 0.649 1.6 -- -- -0.0997 1.21 19.14 2102 -- --
339.8 0.859 5.18 -1.75 -- 1.25 -- -2.01 -0.203 -- 19.6 2310 -- --
364.34 0.895 5.05 -0.738 0.718 -- -0.512 -- 0.21 1.23 -- -- -- --
365.3 0.895 5.05 -0.719 0.717 -- -- -- 0.214 0.978 -- -- -- --
344.41 0.864 5.12 -1.54 -- 1.74 -- -- -0.129 -- 19.04 2434 -- --
365.06 0.89 5.05 -- 0.736 1.13 -- -- 0.208 0.455 18.3 2052 -- --
397.3 0.931 5.04 -0.693 -- -- -- -- 0.228 -- -- -- -- --
378.94 0.911 5.03 -- 0.705 -- -- -- 0.294 0.935 -- -- -- --
382.25 0.911 5.06 -- -- 1.04 -- -- 0.135 -- 19.7 848 -- --
409.95 0.945 5.02 -- -- -- -- -- 0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 304.03 temperature 20 720 > th dose independent rect. 19 12
9 306.92 temperature 20 720 > th dose independent sin 11 NA
11 307.03 temperature 20 1440 < th dose independent rect. 22 2
19 307.65 temperature 20 1440 > th dose independent rect. 22 2
30 308.71 wind 9 14400 > th dose independent rect. 23 2
32 308.88 temperature 20 270 > th dose independent rect. 1 8
33 308.89 temperature 20 720 > th dose independent rect. 21 7
34 308.91 temperature 20 1440 > th dose independent rect. 6 1
35 308.91 temperature 20 1440 < th dose independent rect. 6 1
41 309.05 wind 9 14400 > th dose dependent rect. 23 2
54 309.89 wind 3 14400 < th dose dependent rect. 1 1
60 310.21 wind 1 14400 > th dose independent rect. 24 2
107 311.89 humidity 90 14400 > th dose dependent rect. 12 2
124 312.48 temperature 20 1440 < th dose independent rect. 22 10
126 312.55 wind 9 14400 < th dose independent rect. 23 1
136 312.81 wind 1 14400 < th dose independent rect. 24 2
167 313.48 atmosphere 995 43200 < th dose dependent rect. 14 20
175 313.61 atmosphere 995 43200 < th dose dependent rect. 12 21
176 313.65 temperature 20 1440 > th dose independent rect. 5 3
187 313.87 atmosphere 995 43200 < th dose independent rect. 21 18
195 313.92 atmosphere 995 43200 < th dose dependent rect. 16 18
199 313.95 atmosphere 995 43200 < th dose independent sin 6 NA
205 314.03 temperature 20 270 > th dose independent rect. 3 4
213 314.12 temperature 20 1440 < th dose independent sin 11 NA
227 314.21 atmosphere 995 43200 > th dose independent rect. 23 15
238 314.30 atmosphere 995 43200 > th dose independent rect. 24 13
241 314.31 atmosphere 995 43200 < th dose dependent rect. 22 12
265 314.47 atmosphere 995 43200 < th dose independent rect. 3 7
267 314.48 atmosphere 995 43200 < th dose independent rect. 4 5
269 314.48 atmosphere 995 43200 < th dose dependent rect. 2 7
271 314.51 atmosphere 995 43200 < th dose independent rect. 5 3
291 314.66 atmosphere 995 43200 > th dose independent rect. 3 7
306 314.80 atmosphere 995 43200 > th dose independent rect. 2 9
308 314.81 humidity 90 14400 > th dose dependent rect. 5 11
310 314.82 atmosphere 995 43200 < th dose dependent sin 8 NA
311 314.83 atmosphere 995 43200 > th dose independent sin 6 NA
312 314.83 atmosphere 995 43200 < th dose independent rect. 2 9
322 314.86 atmosphere 995 43200 > th dose independent rect. 19 19
329 314.93 atmosphere 995 43200 > th dose independent rect. 4 5
337 315.00 atmosphere 995 43200 < th dose independent rect. 24 13
350 315.10 temperature 10 43200 > th dose independent rect. 10 7
353 315.12 atmosphere 995 43200 < th dose independent rect. 1 11
355 315.15 atmosphere 995 43200 < th dose dependent rect. 4 4
380 315.35 humidity 90 14400 > th dose independent rect. 13 1
405 315.48 atmosphere 995 43200 < th dose dependent rect. 11 17
430 315.67 humidity 90 14400 > th dose dependent rect. 12 7
474 315.92 humidity 90 14400 > th dose independent rect. 6 1
496 316.07 humidity 90 14400 < th dose independent rect. 6 1
513 316.23 humidity 90 14400 > th dose dependent sin 0 NA
535 316.38 humidity 80 14400 > th dose dependent rect. 5 2
586 316.70 temperature 20 4320 > th dose independent rect. 19 2
591 316.73 humidity 90 14400 > th dose independent rect. 7 12
601 316.77 temperature 10 720 > th dose dependent rect. 21 10
604 316.79 humidity 90 14400 > th dose independent rect. 7 9
609 316.81 humidity 90 14400 > th dose independent rect. 9 14
611 316.82 humidity 90 14400 > th dose independent rect. 9 10
647 316.96 humidity 90 14400 > th dose independent sin 21 NA
673 317.05 atmosphere 995 43200 < th dose dependent sin 17 NA
677 317.06 humidity 90 14400 > th dose independent rect. 12 7
697 317.13 temperature 10 43200 > th dose independent rect. 10 5
716 317.20 humidity 50 14400 > th dose dependent rect. 5 2
732 317.29 radiation 30 4320 < th dose independent rect. 7 1
794 317.51 humidity 90 14400 > th dose dependent rect. 7 18
796 317.52 humidity 90 14400 > th dose independent rect. 3 14
798 317.53 humidity 90 14400 < th dose independent rect. 13 1
802 317.55 humidity 90 14400 < th dose independent rect. 7 8
809 317.56 temperature 20 4320 > th dose independent rect. 17 5
811 317.56 humidity 90 14400 > th dose dependent rect. 11 13
819 317.60 humidity 90 14400 > th dose dependent rect. 9 16
857 317.71 radiation 40 14400 > th dose independent rect. 7 1
874 317.71 radiation 40 14400 > th dose dependent rect. 7 1
955 317.91 wind 9 14400 < th dose independent rect. 5 4