BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0584700 Os02g0584700|J075042D04
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0584700 Heavy metal transport/detoxification protein d... 162 5e-41
Os02g0584600 131 1e-31
Os02g0584800 Heavy metal transport/detoxification protein d... 122 7e-29
>Os02g0584700 Heavy metal transport/detoxification protein domain containing
protein
Length = 117
Score = 162 bits (410), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 85/117 (72%)
Query: 1 MAKQKIVIKVNMASDKCRSKAMALVASTSGVDSVALAXXXXXXXXXXXXXXXSIKLTTAL 60
MAKQKIVIKVNMASDKCRSKAMALVASTSGVDSVALA SIKLTTAL
Sbjct: 1 MAKQKIVIKVNMASDKCRSKAMALVASTSGVDSVALAGDGKDQVVVVGDGVDSIKLTTAL 60
Query: 61 RKKVGHATLMTXXXXXXXXXXXXXXXXXYPWSYHPYTFAPPAQHVVYQYPASSWSIF 117
RKKVGHATLMT YPWSYHPYTFAPPAQHVVYQYPASSWSIF
Sbjct: 61 RKKVGHATLMTVGEVKKEEKKPEHAVVEYPWSYHPYTFAPPAQHVVYQYPASSWSIF 117
>Os02g0584600
Length = 119
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 78/115 (67%), Gaps = 2/115 (1%)
Query: 1 MAKQKIVIKVNMASDKCRSKAMALVASTSGVDSVALAXXXXXXXXXXXXXXXSIKLTTAL 60
MAKQKIVIK+NMASDKCRSKAMALVAST+GVDSVALA SI+LTTAL
Sbjct: 1 MAKQKIVIKMNMASDKCRSKAMALVASTTGVDSVALAGDGKDQLVVVGDGVDSIELTTAL 60
Query: 61 RKKVGHATLMTXXXXXXXXXXXXXXXXX--YPWSYHPYTFAPPAQHVVYQYPASS 113
RKKVGHATLMT YPW+ +PY +APP QHVVYQYPASS
Sbjct: 61 RKKVGHATLMTVGEDKKEEKKPEPAVVEYPYPWNCYPYGYAPPPQHVVYQYPASS 115
>Os02g0584800 Heavy metal transport/detoxification protein domain containing
protein
Length = 121
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 76/117 (64%), Gaps = 4/117 (3%)
Query: 1 MAKQKIVIKVNMASDKCRSKAMALVASTSGVDSVALAXXXXXXXXXXXXXXXSIKLTTAL 60
MAKQKIVIKV M+ DKCRSKAMALVA+T GVDSVALA SIKLT AL
Sbjct: 1 MAKQKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAGDGKDQVVVVGDGVDSIKLTAAL 60
Query: 61 RKKVGHATLMTXX--XXXXXXXXXXXXXXXYPWSYHP-YTFAPPAQHVVY-QYPASS 113
RKKVGHATL+T YPWSYHP YT+APPAQHV Y QYPASS
Sbjct: 61 RKKVGHATLVTVGEVKKEEKKPEPAAAAVEYPWSYHPAYTYAPPAQHVFYQQYPASS 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.125 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,489,269
Number of extensions: 46300
Number of successful extensions: 136
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 3
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)