Os04g0469300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0469300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 503.97 | 1.05 | 6.8 | -2.92 | 0.0448 | 3.24 | 1.24 | -4.22 | -0.687 | 10.2 | 20.59 | 383 | 5.96 | -- |
| 531.98 | 1.07 | 6.73 | -2.34 | 0.312 | 3.47 | 2.95 | -- | -0.578 | 12.9 | 20.5 | 414 | 6.39 | -- |
| 507 | 1.05 | 6.81 | -2.97 | 0.35 | 3.3 | -- | -4.93 | -0.718 | 9.56 | 20.52 | 397 | 6.57 | -- |
| 570.17 | 1.11 | 6.72 | -2.25 | 0.245 | 3.26 | -- | -- | -0.529 | 9.78 | 20.53 | 440 | 6.65 | -- |
| 508.81 | 1.05 | 6.81 | -2.96 | -- | 3.22 | -- | -4.76 | -0.704 | -- | 20.59 | 411 | 6.23 | -- |
| 749.6 | 1.28 | 6.62 | -1.71 | 2.47 | -- | -2.22 | -- | -0.0791 | 3.17 | -- | -- | -- | -- |
| 765.49 | 1.3 | 6.61 | -1.67 | 2.46 | -- | -- | -- | -0.0665 | 3.26 | -- | -- | -- | -- |
| 570.62 | 1.11 | 6.73 | -2.25 | -- | 3.2 | -- | -- | -0.524 | -- | 20.5 | 438 | 6.3 | -- |
| 699.56 | 1.23 | 6.65 | -- | 0.384 | 3.09 | -- | -- | -0.253 | 9.67 | 20.5 | 415 | 6.71 | -- |
| 1109.23 | 1.56 | 6.61 | -1.56 | -- | -- | -- | -- | -0.00169 | -- | -- | -- | -- | -- |
| 838.95 | 1.35 | 6.57 | -- | 2.43 | -- | -- | -- | 0.119 | 3.26 | -- | -- | -- | -- |
| 701.18 | 1.23 | 6.66 | -- | -- | 3.13 | -- | -- | -0.272 | -- | 20.5 | 431 | 6.31 | -- |
| 1173.83 | 1.6 | 6.57 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 512.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 2 | 515.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 3 | 516.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 8 | 520.66 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 14 | 524.39 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 16 |
| 18 | 525.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 31 | 527.92 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 13 |
| 42 | 529.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 43 | 529.43 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 44 | 529.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 123 | 536.31 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 129 | 536.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 142 | 537.55 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 154 | 538.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 157 | 538.39 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 167 | 538.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 181 | 539.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 211 | 541.15 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 10 |
| 213 | 541.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 214 | 541.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 264 | 543.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 338 | 545.93 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 23 |
| 384 | 547.35 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 398 | 547.58 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 17 |
| 483 | 550.48 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 526 | 551.43 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 532 | 551.52 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 537 | 551.61 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 586 | 552.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 593 | 552.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 658 | 554.27 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 665 | 554.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 762 | 556.53 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 783 | 556.91 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 875 | 558.78 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 882 | 558.89 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 23 |
| 902 | 559.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 942 | 559.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 951 | 559.87 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 964 | 560.06 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |