BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0416900 Os04g0416900|J075149H16
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0416900 Similar to Digalactosyldiacylglycerol synthase 1 429 e-121
Os02g0539100 Similar to Digalactosyldiacylglycerol synthase 1 292 1e-79
Os11g0158400 Similar to Digalactosyldiacylglycerol synthase 1 278 1e-75
Os03g0214400 Similar to Digalactosyldiacylglycerol synthase 2 166 1e-41
Os03g0268300 Similar to Digalactosyldiacylglycerol synthase 2 152 2e-37
>Os04g0416900 Similar to Digalactosyldiacylglycerol synthase 1
Length = 204
Score = 429 bits (1104), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 QAAKMNPHSLAYHLLFIDNGLFSFLNFRYKVFINPSVSDVLCTATAEALAMGKFVICADH 60
QAAKMNPHSLAYHLLFIDNGLFSFLNFRYKVFINPSVSDVLCTATAEALAMGKFVICADH
Sbjct: 1 QAAKMNPHSLAYHLLFIDNGLFSFLNFRYKVFINPSVSDVLCTATAEALAMGKFVICADH 60
Query: 61 PSNEFFKSFPNCLTYKTSEEFVARVKEAMASEPSPLTPEQRYSLSWEAATERFMEYSELD 120
PSNEFFKSFPNCLTYKTSEEFVARVKEAMASEPSPLTPEQRYSLSWEAATERFMEYSELD
Sbjct: 61 PSNEFFKSFPNCLTYKTSEEFVARVKEAMASEPSPLTPEQRYSLSWEAATERFMEYSELD 120
Query: 121 KVLNNKIGYSGQDGKRSKVRKIPLLPRLSEVVDGGLAFAHHCLTGNEILRLATGAIPGTR 180
KVLNNKIGYSGQDGKRSKVRKIPLLPRLSEVVDGGLAFAHHCLTGNEILRLATGAIPGTR
Sbjct: 121 KVLNNKIGYSGQDGKRSKVRKIPLLPRLSEVVDGGLAFAHHCLTGNEILRLATGAIPGTR 180
Query: 181 DYDKQQCMDLNLLPPQVQHPVYGW 204
DYDKQQCMDLNLLPPQVQHPVYGW
Sbjct: 181 DYDKQQCMDLNLLPPQVQHPVYGW 204
>Os02g0539100 Similar to Digalactosyldiacylglycerol synthase 1
Length = 802
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 137/176 (77%), Positives = 153/176 (86%), Gaps = 4/176 (2%)
Query: 29 YKVFINPSVSDVLCTATAEALAMGKFVICADHPSNEFFKSFPNCLTYKTSEEFVARVKEA 88
YKVFINPS+SDVLCTATAEALAMGKFVICA+HPSNEFF SFPNCLTY+T EEFVARV EA
Sbjct: 631 YKVFINPSISDVLCTATAEALAMGKFVICAEHPSNEFFMSFPNCLTYRTPEEFVARVNEA 690
Query: 89 MASEPSPLTPEQRYSLSWEAATERFMEYSELDKVLNNKIGYSGQDGKRSKVRKIPLLPRL 148
MA EP PLTPEQRY+LSWEAATERFMEYS+LDKVL+ + + RSK R+ + L
Sbjct: 691 MAREPQPLTPEQRYNLSWEAATERFMEYSDLDKVLSQPV---TEGVHRSKTRRT-IQSNL 746
Query: 149 SEVVDGGLAFAHHCLTGNEILRLATGAIPGTRDYDKQQCMDLNLLPPQVQHPVYGW 204
S+ +DGGLAFAHHCLTG+E+LRLATGAIPGTRDYDKQ C+D+ LLPPQVQHPVYGW
Sbjct: 747 SDAMDGGLAFAHHCLTGSEVLRLATGAIPGTRDYDKQHCVDMGLLPPQVQHPVYGW 802
>Os11g0158400 Similar to Digalactosyldiacylglycerol synthase 1
Length = 736
Score = 278 bits (712), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/186 (70%), Positives = 157/186 (84%), Gaps = 14/186 (7%)
Query: 29 YKVFINPSVSDVLCTATAEALAMGKFVICADHPSNEFFKSFPNCLTYKTSEEFVARVKEA 88
YKVFINPS+SDVLCTATAEALAMGKFV+CADHPSN+FF+SFPNCLTYKTSE+FVA+VKEA
Sbjct: 555 YKVFINPSISDVLCTATAEALAMGKFVVCADHPSNDFFRSFPNCLTYKTSEDFVAKVKEA 614
Query: 89 MASEPSPLTPEQRYSLSWEAATERFMEYSELDKVLNNK----------IGYSGQDGKRSK 138
MA +P PLTPEQRY+LSWEAAT+RFME+SELDKVL++ G SG + K
Sbjct: 615 MARDPQPLTPEQRYNLSWEAATQRFMEHSELDKVLSSSNRDCTTSTSGCGKSGDN----K 670
Query: 139 VRKIPLLPRLSEVVDGGLAFAHHCLTGNEILRLATGAIPGTRDYDKQQCMDLNLLPPQVQ 198
+ K LP +S++VDGGLAFAH+C TGNE+LRL+TGAIPGT +Y+KQ +DL+LLPPQVQ
Sbjct: 671 MEKSASLPNMSDMVDGGLAFAHYCFTGNELLRLSTGAIPGTLNYNKQHSLDLHLLPPQVQ 730
Query: 199 HPVYGW 204
+PVYGW
Sbjct: 731 NPVYGW 736
>Os03g0214400 Similar to Digalactosyldiacylglycerol synthase 2
Length = 476
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 29 YKVFINPSVSDVLCTATAEALAMGKFVICADHPSNEFFKSFPNCLTYKTSEEFVARVKEA 88
YKVFINPS +DV+CT TAEALAMGK VICA+HPSNEFFK FPNC TY + EEFV +A
Sbjct: 301 YKVFINPSTTDVVCTTTAEALAMGKIVICANHPSNEFFKQFPNCRTYDSGEEFVQLTLDA 360
Query: 89 MASEPSPLTPEQRYSLSWEAATERFMEYSELDKVLNNKIGYSGQDGKRSKVRKIPLLPR- 147
+A +P+PLT Q + LSWEAATERFME +E LN I + + SKV +P R
Sbjct: 361 LAEQPAPLTDMQSHDLSWEAATERFMEAAE----LNLPISAEPRIHQTSKV-SLPAFMRT 415
Query: 148 --LSEVVDGGLAFAHHCLTGNEILRLATGAIPGTRDYDKQQCMDLNLLP 194
L + ++ + H L+G E+ R A GA+P T D+Q C DL L P
Sbjct: 416 RKLKQSLEDASVYLHQALSGLEVTRRAFGAVPKTLQPDEQLCNDLGLAP 464
>Os03g0268300 Similar to Digalactosyldiacylglycerol synthase 2
Length = 463
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 103/162 (63%), Gaps = 5/162 (3%)
Query: 29 YKVFINPSVSDVLCTATAEALAMGKFVICADHPSNEFFKSFPNCLTYKTSEEFVARVKEA 88
YKVFINPS +DV+CT TAEALAMGK VICA+HPSNEFFK FPNC Y T +EFV +A
Sbjct: 301 YKVFINPSTTDVVCTTTAEALAMGKIVICANHPSNEFFKRFPNCHMYNTEKEFVRLTMKA 360
Query: 89 MASEPSPLTPEQRYSLSWEAATERFMEYSELDKVLNNKIGYSGQDGKRSKVRKIPLLPRL 148
+A EP PL+ E R+ LSWEAATERF+ +++ +++ K Q + L
Sbjct: 361 LAEEPIPLSEELRHELSWEAATERFVRVADIAPIMSIK-----QHSPSPQYFMYISPDEL 415
Query: 149 SEVVDGGLAFAHHCLTGNEILRLATGAIPGTRDYDKQQCMDL 190
+ ++ AF H+ ++G E R GAIP T D+QQC +L
Sbjct: 416 KKNMEEASAFFHNAISGFETARCVFGAIPNTLQPDEQQCKEL 457
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,064,102
Number of extensions: 273419
Number of successful extensions: 590
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 5
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)