Os04g0416900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Digalactosyldiacylglycerol synthase 1.
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Os04g0416900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Digalactosyldiacylglycerol synthase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.04 | 0.548 | 9.32 | 0.332 | 0.676 | -1.49 | 1.74 | 6.09 | -0.0219 | 4.08 | 26.04 | 4727 | -- | -- |
| 138.76 | 0.549 | 9.44 | -0.0765 | 0.816 | -1.63 | 2.02 | -- | -0.03 | 4.21 | 22.5 | 25110 | -- | -- |
| 141.91 | 0.555 | 9.33 | 0.256 | 0.747 | -1.55 | -- | 6.23 | -0.0413 | 5.09 | 26.17 | 4609 | -- | -- |
| 141.3 | 0.554 | 9.43 | 0.0318 | 0.759 | -1.76 | -- | -- | 0.0631 | 5.27 | 21.5 | 24847 | -- | -- |
| 167.69 | 0.603 | 9.34 | 0.342 | -- | -1.5 | -- | 6.64 | -0.0928 | -- | 26.7 | 4794 | -- | -- |
| 194.01 | 0.653 | 9.6 | -1.81 | 0.726 | -- | 1.54 | -- | -0.686 | 4.46 | -- | -- | -- | -- |
| 198.51 | 0.66 | 9.6 | -1.82 | 0.769 | -- | -- | -- | -0.694 | 5.35 | -- | -- | -- | -- |
| 172.78 | 0.612 | 9.44 | 0.098 | -- | -1.85 | -- | -- | 0.0821 | -- | 21.1 | 23503 | -- | -- |
| 140.28 | 0.552 | 9.42 | -- | 0.778 | -1.81 | -- | -- | 0.0618 | 5.1 | 21.2 | 24153 | -- | -- |
| 229.38 | 0.708 | 9.61 | -1.79 | -- | -- | -- | -- | -0.675 | -- | -- | -- | -- | -- |
| 285.42 | 0.79 | 9.55 | -- | 0.739 | -- | -- | -- | -0.492 | 5.44 | -- | -- | -- | -- |
| 172.91 | 0.612 | 9.44 | -- | -- | -1.79 | -- | -- | 0.0551 | -- | 21.17 | 23519 | -- | -- |
| 313.87 | 0.827 | 9.56 | -- | -- | -- | -- | -- | -0.476 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.04 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 116.69 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 3 | 117.02 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 22 | 118.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 23 | 118.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 24 | 118.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 32 | 119.44 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 36 | 119.59 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 40 | 119.74 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 58 | 119.82 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 64 | 119.98 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 65 | 120.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 70 | 120.17 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 74 | 120.23 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 95 | 120.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 97 | 120.99 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 111 | 121.29 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 125 | 121.64 | temperature | 15 | 43200 | < th | dose dependent | sin | 10 | NA |
| 165 | 122.15 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 167 | 122.15 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 174 | 122.24 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 182 | 122.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 225 | 122.77 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 272 | 123.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 301 | 123.48 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 305 | 123.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 8 |
| 320 | 123.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 338 | 123.83 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 340 | 123.86 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 359 | 123.99 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 364 | 124.02 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 20 |
| 379 | 124.17 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 419 | 124.33 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 425 | 124.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 470 | 124.54 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 476 | 124.57 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 481 | 124.58 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 20 |
| 538 | 124.80 | humidity | 90 | 43200 | > th | dose dependent | sin | 8 | NA |
| 618 | 125.08 | temperature | 15 | 43200 | > th | dose independent | sin | 9 | NA |
| 710 | 125.35 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 743 | 125.47 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 824 | 125.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 835 | 125.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 867 | 125.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 909 | 125.95 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 919 | 125.98 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 954 | 126.06 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 975 | 126.11 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 980 | 126.14 | temperature | 15 | 43200 | < th | dose independent | sin | 9 | NA |
| 985 | 126.15 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 987 | 126.15 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 1000 | 126.18 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |