BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0416900 Os04g0416900|J075149H16
         (204 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11670.1  | chr3:3681090-3684495 REVERSE LENGTH=809            272   8e-74
AT4G00550.1  | chr4:238154-240019 REVERSE LENGTH=474              143   8e-35

>AT3G11670.1 | chr3:3681090-3684495 REVERSE LENGTH=809
          Length = 808

 Score =  272 bits (696), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 125/177 (70%), Positives = 149/177 (84%), Gaps = 7/177 (3%)

Query: 28  RYKVFINPSVSDVLCTATAEALAMGKFVICADHPSNEFFKSFPNCLTYKTSEEFVARVKE 87
           +YKVFINPS+SDVLCTATAEALAMGKFV+CADHPSNEFF+SFPNCLTYKTSE+FV++V+E
Sbjct: 639 KYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVSKVQE 698

Query: 88  AMASEPSPLTPEQRYSLSWEAATERFMEYSELDKVLNNKIGYSGQDGKRSKVRKIPLLPR 147
           AM  EP PLTPEQ Y+LSWEAAT+RFMEYS+LDK+LNN     G+ G+  K+RK   +P 
Sbjct: 699 AMTKEPLPLTPEQMYNLSWEAATQRFMEYSDLDKILNN-----GEGGR--KMRKSRSVPS 751

Query: 148 LSEVVDGGLAFAHHCLTGNEILRLATGAIPGTRDYDKQQCMDLNLLPPQVQHPVYGW 204
            +EVVDGGLAF+H+ LTGN+ LRL TGA P T+DYD Q C DLNL+PP V  P++GW
Sbjct: 752 FNEVVDGGLAFSHYVLTGNDFLRLCTGATPRTKDYDNQHCKDLNLVPPHVHKPIFGW 808



>AT4G00550.1 | chr4:238154-240019 REVERSE LENGTH=474
          Length = 473

 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 106/166 (63%), Gaps = 10/166 (6%)

Query: 29  YKVFINPSVSDVLCTATAEALAMGKFVICADHPSNEFFKSFPNCLTYKTSEEFVARVKEA 88
           YKVF+NPS +DV+CT TAEALAMGK V+CA+H SN+FFK FPNC TY   + FV    +A
Sbjct: 303 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHISNKFFKQFPNCRTYDDGQGFVRATLKA 362

Query: 89  MASEPSPLTPEQRYSLSWEAATERFMEYSELDKVLNNKIGYSGQDGKRSKVRKIPLLPRL 148
           +  +PS LT +QR+ LSWEAAT+RF++ S+L+++       S  D   SK R +     +
Sbjct: 363 LGEQPSQLTEQQRHELSWEAATQRFIKVSDLNRL-------SRADSNLSK-RSVFASSSI 414

Query: 149 S--EVVDGGLAFAHHCLTGNEILRLATGAIPGTRDYDKQQCMDLNL 192
           S  + ++   A+ H   +G E  R A GAIPG+   D++ C DL L
Sbjct: 415 SVGKNLEDMSAYIHFLASGFEASRTAFGAIPGSLQPDEELCRDLGL 460



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,641,608
Number of extensions: 186952
Number of successful extensions: 406
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)