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Os02g0539100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Digalactosyldiacylglycerol synthase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0199) R2 : 0.899
β1 : 0.812 (0.073) R2dD : 0.0268 R2D : 0.00083
β2 : 2.32 (0.0517) R2dC : 0.472 R2C : 0.609
β3 : -1.59 (0.0485) R2dE : 0.262 R2E : 0.366
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.79 (0.201) R2dD*E : 0.0415 R2D*E : 0.00911
γ1 : -0.00904 (0.0422) R2dN8 : 3.7e-05 R2N8 : -0.00497
σ : 0.368
deviance : 62.55
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C
peak time of C : 7.57
E
wheather : temperature
threshold : 19.1
memory length : 240
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 6.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.94 0.373 11.2 0.784 2.32 -1.61 0.172 2.81 -0.0123 7.6 19.26 247 19.4 6.82
82.88 0.424 11.3 0.697 2.21 -1.4 -0.433 -- -0.00455 7.75 18.98 173 19.4 7.4
62.55 0.368 11.2 0.812 2.32 -1.59 -- 2.79 -0.00904 7.57 19.1 240 19.4 6.85
83.32 0.425 11.3 0.619 2.23 -1.44 -- -- -0.0557 7.63 18.9 153 19.6 7.47
213.97 0.681 11.5 1.4 -- -2.08 -- 1.53 -0.0779 -- 18.79 122 16.5 10.4
138.22 0.551 11.3 0.51 2.84 -- -1 -- -0.0872 9.25 -- -- -- --
141.8 0.558 11.3 0.473 2.84 -- -- -- -0.0888 9.23 -- -- -- --
162.88 0.594 11.5 0.546 -- -2.48 -- -- -0.0115 -- 18.7 348 13.1 11.1
93.67 0.451 11.3 -- 2.23 -1.4 -- -- -0.111 7.66 18.9 148 19.6 7.4
610.83 1.15 11.3 0.462 -- -- -- -- -0.0754 -- -- -- -- --
147.7 0.569 11.3 -- 2.84 -- -- -- -0.141 9.21 -- -- -- --
148.1 0.567 11.4 -- -- -2.23 -- -- -0.0822 -- 13.09 254 12.6 12.9
616.47 1.16 11.3 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.73 temperature 10.0 270 > th dose dependent rect. 19 7
2 67.89 temperature 20.0 270 > th dose independent rect. 19 7
5 69.08 temperature 20.0 10 > th dose independent rect. 21 7
12 71.15 temperature 15.0 10 > th dose dependent rect. 21 7
72 83.67 atmosphere 1015.0 90 < th dose dependent rect. 20 7
81 84.99 atmosphere 1015.0 90 < th dose independent rect. 20 7
107 87.41 precipitation 0.1 90 < th dose independent rect. 20 7
108 87.41 precipitation 0.1 90 < th dose dependent rect. 20 7
110 87.45 precipitation 0.1 90 < th dose independent rect. 3 17
111 87.45 precipitation 0.1 90 < th dose dependent rect. 3 17
119 87.90 temperature 10.0 90 > th dose independent rect. 20 7
120 87.90 temperature 30.0 90 < th dose independent rect. 20 7
121 87.90 humidity 50.0 90 > th dose independent rect. 20 7
124 87.90 atmosphere 995.0 90 > th dose independent rect. 20 7
125 87.90 radiation 1.0 90 < th dose independent rect. 20 7
130 87.90 temperature 10.0 90 > th dose independent rect. 3 17
131 87.90 atmosphere 1015.0 90 < th dose independent rect. 3 17
132 87.90 radiation 1.0 90 < th dose dependent rect. 20 7
137 88.00 wind 9.0 90 < th dose independent rect. 20 7
167 89.06 wind 9.0 90 < th dose independent rect. 3 17
170 89.15 atmosphere 995.0 90 > th dose independent rect. 3 17
174 89.40 atmosphere 1015.0 10 < th dose dependent rect. 21 7
175 89.47 atmosphere 1015.0 10 < th dose independent rect. 21 7
178 89.55 humidity 50.0 90 > th dose dependent rect. 20 7
218 90.47 temperature 20.0 90 > th dose independent rect. 8 19
228 90.89 temperature 10.0 270 > th dose dependent rect. 20 17
241 91.22 temperature 10.0 270 > th dose independent rect. 6 9
242 91.22 atmosphere 1015.0 270 < th dose independent rect. 6 9
243 91.22 temperature 10.0 270 > th dose independent rect. 15 15
244 91.23 wind 9.0 270 < th dose independent rect. 6 9
250 91.32 precipitation 0.1 270 < th dose independent rect. 6 9
252 91.32 precipitation 0.1 270 < th dose dependent rect. 6 9
269 91.57 atmosphere 995.0 270 > th dose independent rect. 15 15
270 91.58 precipitation 0.1 10 < th dose independent rect. 21 7
272 91.58 precipitation 0.1 10 < th dose dependent rect. 21 7
277 91.72 wind 9.0 90 < th dose dependent rect. 20 7
281 91.76 radiation 40.0 270 < th dose independent rect. 15 15
305 91.92 atmosphere 995.0 270 > th dose independent rect. 6 9
328 91.97 temperature 10.0 90 > th dose dependent rect. 8 19
333 92.03 wind 9.0 10 < th dose independent rect. 21 7
374 92.47 wind 9.0 270 < th dose independent rect. 15 15
379 92.60 precipitation 0.1 270 < th dose independent rect. 15 15
380 92.60 precipitation 0.1 270 < th dose dependent rect. 15 15
516 94.34 humidity 50.0 90 > th dose independent rect. 3 17
620 95.24 wind 9.0 10 < th dose dependent rect. 21 7
630 95.43 temperature 10.0 1440 > th dose independent rect. 22 7
633 95.43 temperature 30.0 1440 < th dose independent rect. 22 7
637 95.43 humidity 50.0 1440 > th dose independent rect. 22 7
644 95.43 atmosphere 995.0 1440 > th dose independent rect. 22 7
645 95.43 radiation 20.0 1440 < th dose independent rect. 22 7
657 95.43 temperature 10.0 1440 > th dose independent rect. 5 17
667 95.57 temperature 20.0 10 > th dose independent rect. 21 18
670 95.72 humidity 50.0 270 > th dose independent rect. 6 9
676 95.83 temperature 10.0 10 > th dose dependent rect. 9 18
712 95.92 temperature 20.0 90 > th dose independent rect. 20 19
728 96.23 radiation 30.0 43200 < th dose dependent rect. 21 7
749 96.37 radiation 1.0 1440 < th dose dependent rect. 21 7
763 96.46 radiation 1.0 270 > th dose independent rect. 6 9
779 96.66 atmosphere 1015.0 270 < th dose independent rect. 6 20
807 96.74 radiation 1.0 1440 < th dose independent rect. 21 7
900 97.01 atmosphere 1015.0 270 < th dose independent rect. 20 17
934 97.11 wind 1.0 270 > th dose independent rect. 2 17
990 97.22 radiation 30.0 90 < th dose dependent rect. 3 17
995 97.27 wind 1.0 270 > th dose independent rect. 6 9
998 97.29 wind 5.0 270 < th dose independent rect. 2 4