BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0404900 Os04g0404900|AK107531
(447 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0404900 Conserved hypothetical protein 820 0.0
Os02g0526000 Conserved hypothetical protein 608 e-174
Os11g0543500 Conserved hypothetical protein 551 e-157
Os05g0155700 Conserved hypothetical protein 403 e-112
Os01g0931100 Conserved hypothetical protein 333 2e-91
Os11g0245600 244 8e-65
>Os04g0404900 Conserved hypothetical protein
Length = 447
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/447 (90%), Positives = 406/447 (90%)
Query: 1 MGGSYELVRTDDAAGHVLDLEAGRCAAVYPKXXXXXXXXXXXXXXXXXXXXXXXRQRLVS 60
MGGSYELVRTDDAAGHVLDLEAGRCAAVYPK RQRLVS
Sbjct: 1 MGGSYELVRTDDAAGHVLDLEAGRCAAVYPKGGGGGGGIAPPPVPSPPSSPASARQRLVS 60
Query: 61 LDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAYKRVPN 120
LDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAYKRVPN
Sbjct: 61 LDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAYKRVPN 120
Query: 121 KLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAYIVTAL 180
KLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAYIVTAL
Sbjct: 121 KLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAYIVTAL 180
Query: 181 CEIWLKGDDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRISVPGSTEKS 240
CEIWLKGDDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRISVPGSTEKS
Sbjct: 181 CEIWLKGDDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRISVPGSTEKS 240
Query: 241 FFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQNGPLRPDAPSW 300
FFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQNGPLRPDAPSW
Sbjct: 241 FFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQNGPLRPDAPSW 300
Query: 301 CQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSMLILAFSLDFF 360
CQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSMLILAFSLDFF
Sbjct: 301 CQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSMLILAFSLDFF 360
Query: 361 GMHMNKPLYTVSYXXXXXXXXXXXXXXXXXXVDMYGHRRPTAVMEWMGTHALMIYVLIAC 420
GMHMNKPLYTVSY VDMYGHRRPTAVMEWMGTHALMIYVLIAC
Sbjct: 361 GMHMNKPLYTVSYALATAGAAGLLFAGIYALVDMYGHRRPTAVMEWMGTHALMIYVLIAC 420
Query: 421 NILPIFIHGFYWREPKNNLLRLIGVGA 447
NILPIFIHGFYWREPKNNLLRLIGVGA
Sbjct: 421 NILPIFIHGFYWREPKNNLLRLIGVGA 447
>Os02g0526000 Conserved hypothetical protein
Length = 376
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 285/376 (75%), Positives = 322/376 (85%)
Query: 72 MILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAYKRVPNKLEATRKAILR 131
MI+VDDAGAFLPA+NHSPWDGVT+ADFVMPFFLF+VG++L LAYKRVP+KLEAT+KA+LR
Sbjct: 1 MIIVDDAGAFLPALNHSPWDGVTIADFVMPFFLFMVGISLTLAYKRVPDKLEATKKAVLR 60
Query: 132 ALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAYIVTALCEIWLKGDDDV 191
ALKLFC+GLVLQGGFFHGVRSLTFG+D+ KIRLMGILQRIAIAY++ A+CEIWLKGDDDV
Sbjct: 61 ALKLFCLGLVLQGGFFHGVRSLTFGVDITKIRLMGILQRIAIAYLLAAICEIWLKGDDDV 120
Query: 192 DSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRISVPGSTEKSFFVKCSVRGDT 251
D G D+++R RYQL + L++ Y L G YVPDWEY+IS PGSTEKSF V+C VRGDT
Sbjct: 121 DCGLDVIRRYRYQLVVALLLSTMYTVILNGVYVPDWEYQISGPGSTEKSFSVRCGVRGDT 180
Query: 252 GPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQNGPLRPDAPSWCQAPFDPEGLL 311
GP CNAVGM+DR ILGI HLY RPVYAR+KQCSIN PQNGPL PDAPSWCQAPFDPEGLL
Sbjct: 181 GPACNAVGMLDRTILGIDHLYRRPVYARTKQCSINYPQNGPLPPDAPSWCQAPFDPEGLL 240
Query: 312 SSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSMLILAFSLDFFGMHMNKPLYTV 371
SSVMAIVTCLIGLQ+GH+I+HF+KHK RI+ WLIPSFSML LAFS+DF G+ MNKPLYT+
Sbjct: 241 SSVMAIVTCLIGLQFGHIIIHFEKHKGRIINWLIPSFSMLALAFSMDFIGIRMNKPLYTI 300
Query: 372 SYXXXXXXXXXXXXXXXXXXVDMYGHRRPTAVMEWMGTHALMIYVLIACNILPIFIHGFY 431
SY VD+YG R+ T MEWMG HALMIYVL+ACNILPIFIHGFY
Sbjct: 301 SYALATSGAAGLLFAGIYTLVDVYGFRKLTIPMEWMGKHALMIYVLVACNILPIFIHGFY 360
Query: 432 WREPKNNLLRLIGVGA 447
WREPKNNLL+ IGVGA
Sbjct: 361 WREPKNNLLKFIGVGA 376
>Os11g0543500 Conserved hypothetical protein
Length = 448
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 258/396 (65%), Positives = 317/396 (80%), Gaps = 3/396 (0%)
Query: 55 RQRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALA 114
RQRLVSLDVFRGITV LMILVDD G +PAI+HSPWDGVTLADFV PFFLFIVGV+LA A
Sbjct: 53 RQRLVSLDVFRGITVALMILVDDVGGIVPAISHSPWDGVTLADFVFPFFLFIVGVSLAFA 112
Query: 115 YKRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIA 174
YK+VP+K+ AT+KA+LRA+KLF VGL+LQGGFFHG+ LT+G+D+ KIRLMG+LQRIAIA
Sbjct: 113 YKKVPDKMLATKKAMLRAVKLFIVGLILQGGFFHGIHELTYGVDIRKIRLMGVLQRIAIA 172
Query: 175 YIVTALCEIWLK---GDDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRI 231
Y+V ALCEIWL+ ++ SG L+ R +Q+F+GL++++TY+ LYG +VPDWEY +
Sbjct: 173 YLVVALCEIWLRRVSSGGNIGSGSMLITRYHHQMFVGLVLVVTYLVILYGLHVPDWEYEV 232
Query: 232 SVPGSTEKSFFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQNG 291
+ P ST K F VKC V+GDTGPGCNAVGMIDR +LGIQHLY PVY +++QCS+ SP+NG
Sbjct: 233 TSPDSTVKHFLVKCGVKGDTGPGCNAVGMIDRSVLGIQHLYAHPVYLKTEQCSMASPRNG 292
Query: 292 PLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSML 351
PL P+APSWC+APFDPEGLLSS+MAIVTCLIGLQ GHVIVHF+KH ERI +W I S +L
Sbjct: 293 PLPPNAPSWCEAPFDPEGLLSSLMAIVTCLIGLQIGHVIVHFKKHNERIKRWSILSLCLL 352
Query: 352 ILAFSLDFFGMHMNKPLYTVSYXXXXXXXXXXXXXXXXXXVDMYGHRRPTAVMEWMGTHA 411
L FSL FG+HMNK LY++SY VD+ G++RP MEWMG HA
Sbjct: 353 TLGFSLHLFGLHMNKSLYSLSYTCVTTGTAGLFFVAIYLLVDVKGYKRPVLPMEWMGKHA 412
Query: 412 LMIYVLIACNILPIFIHGFYWREPKNNLLRLIGVGA 447
LMI+VL+ACN++P+ + GFYW+EP NNLL+LIG+G
Sbjct: 413 LMIFVLVACNVIPVLVQGFYWKEPSNNLLKLIGIGG 448
>Os05g0155700 Conserved hypothetical protein
Length = 491
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/396 (49%), Positives = 265/396 (66%), Gaps = 9/396 (2%)
Query: 56 QRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAY 115
+R+ SLDVFRG+TV +MILVDDAG P +NHSPW GVT+ADFVMP FLFI+GV+ AL +
Sbjct: 53 RRVASLDVFRGLTVAMMILVDDAGGAWPGMNHSPWLGVTVADFVMPAFLFIIGVSAALVF 112
Query: 116 KRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAY 175
K+ PNK AT+KA +RA+KLF +G++LQGG+ HG +LT+GID++ IR +G+LQRIAI Y
Sbjct: 113 KKTPNKTVATKKAAIRAIKLFILGVILQGGYIHGRHNLTYGIDLDHIRWLGVLQRIAIGY 172
Query: 176 IVTALCEIWLKGDDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYR----- 230
+ A+ EIWL + VDS +K+ + + +++ Y+G L G YV +WE++
Sbjct: 173 FLAAISEIWLVNNISVDSAISFVKKYFMEWIVAVMISALYVGLLLGLYVSNWEFKVQTSN 232
Query: 231 ----ISVPGSTEKSFFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSIN 286
I PG+ ++C VRG GP CNAVG +DR +LG HLY PVY R+K+CS+N
Sbjct: 233 SILTIPTPGNEIGMKMIQCGVRGSLGPPCNAVGFVDRVLLGENHLYKNPVYKRTKECSVN 292
Query: 287 SPQNGPLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIP 346
SP GPL P+AP WC APFDPEGLLS++MA VTC +GL +GHV+VH + H R++ WL+
Sbjct: 293 SPDYGPLPPNAPDWCLAPFDPEGLLSTLMAAVTCFVGLHFGHVLVHCKDHSPRMLLWLLA 352
Query: 347 SFSMLILAFSLDFFGMHMNKPLYTVSYXXXXXXXXXXXXXXXXXXVDMYGHRRPTAVMEW 406
S + + F L GM +KPLYTVSY VD+ ++P + +W
Sbjct: 353 STVLTVSGFLLQLLGMPFSKPLYTVSYMLLTGGVSGFLLLLLYYIVDVINIKKPFILFQW 412
Query: 407 MGTHALMIYVLIACNILPIFIHGFYWREPKNNLLRL 442
MG +AL++YVL AC I P + GFYWR P+NNL+ L
Sbjct: 413 MGMNALIVYVLAACEIFPTLVQGFYWRSPENNLVDL 448
>Os01g0931100 Conserved hypothetical protein
Length = 488
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 248/391 (63%), Gaps = 6/391 (1%)
Query: 56 QRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAY 115
+R+ SLDVFRG+TV LMILVD AG P I H+PW+G LADFVMPFFLFIVG+A+ L+
Sbjct: 51 RRVASLDVFRGLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSL 110
Query: 116 KRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAY 175
KR+P++ A R+ +LR LKL G++LQGG+ H L++G+DM+ +R GILQRIA+AY
Sbjct: 111 KRIPDRGRAVRRVVLRTLKLLFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAY 170
Query: 176 IVTALCEIWLKG---DDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRIS 232
+V A+ EI K D SGF + + Q + +++ Y+ +YG YVPDW++R+S
Sbjct: 171 LVVAVLEIVTKNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVS 230
Query: 233 VPGSTE--KSFFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQN 290
+ K V C RG P CNAVG IDRK+LGI H+Y RP + R K C+ +SP
Sbjct: 231 DVKNPNFGKILTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHE 290
Query: 291 GPLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSM 350
GP + D+P+WC APF+PEGLLSS+ A+++ +IG+ YGHV+VH + H +R+ +W I ++
Sbjct: 291 GPFKTDSPAWCYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMGITL 350
Query: 351 LILAFSLDF-FGMHMNKPLYTVSYXXXXXXXXXXXXXXXXXXVDMYGHRRPTAVMEWMGT 409
LIL +L F + +NK LYT SY VD+ P A ++W G
Sbjct: 351 LILGLTLHFSHAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGM 410
Query: 410 HALMIYVLIACNILPIFIHGFYWREPKNNLL 440
+A+++YV+ A I F++G+Y+ N L+
Sbjct: 411 NAMLVYVMAAAGIFEGFLNGWYYEGTNNTLV 441
>Os11g0245600
Length = 447
Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 205/402 (50%), Gaps = 71/402 (17%)
Query: 56 QRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALAY 115
+R+ +LD FRG+T++LMILVDDAG ++HSPW+G TLADFVMPFFLFIVGVA+A A
Sbjct: 59 KRVAALDAFRGLTIVLMILVDDAGGAYERMDHSPWNGCTLADFVMPFFLFIVGVAIAFAL 118
Query: 116 KRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAY 175
KRVP A +K +R LK+ GL+LQGG+ H L++G+DM+KIR GILQRIA+ Y
Sbjct: 119 KRVPKLGAAVKKITIRTLKMLFWGLLLQGGYSHAPDDLSYGVDMKKIRWCGILQRIALVY 178
Query: 176 IVTALCEIWLKG--DDDVDSG-FDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRIS 232
V AL E + V SG + + R+Q G + + YM + YVPDW Y
Sbjct: 179 FVVALIEAFTTKVRPTTVRSGPYAIFHAYRWQWLGGFVALFIYMVTTFSLYVPDWSYVYH 238
Query: 233 VPGSTE--KSF---------FVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSK 281
G K F V+C VRG P CNAVG +DR + GI HLY +PV+ RSK
Sbjct: 239 NDGDVNDGKQFTVLLAVFPDHVQCGVRGHLDPACNAVGYVDRVVWGINHLYTQPVWIRSK 298
Query: 282 QCSINSPQNGPLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIM 341
I+S ++ +DP + TC
Sbjct: 299 FNIIDSVRDN-------------WDP---------LWTC--------------------- 315
Query: 342 KWLIPSFSMLILAFSLDFFGMHMNKPLYTVSYXXXXXXXXXXXXXXXXXXVDMYGHRRPT 401
S F + +NK LY++SY +D++G R P
Sbjct: 316 --------------SRSFQAIPINKQLYSLSYVCFTAGAAGVVLSAFYILIDVWGLRTPF 361
Query: 402 AVMEWMGTHALMIYVLIACNILPIFIHGFYWREPKNNLLRLI 443
+EW+G +A++++VL A I P F++G+Y+ P N L+ I
Sbjct: 362 LFLEWIGMNAMLVFVLAAQAIFPAFVNGWYYDSPGNTLVSWI 403
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.145 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,167,754
Number of extensions: 548820
Number of successful extensions: 1416
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 6
Length of query: 447
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 343
Effective length of database: 11,605,545
Effective search space: 3980701935
Effective search space used: 3980701935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 158 (65.5 bits)