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Os04g0404900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.3 (0.0559) R2 : 0.59
β1 : -3.65 (0.197) R2dD : 0.372 R2D : 0.228
β2 : 5.33 (1.32) R2dC : 1.53 R2C : -2.61
β3 : -7.14 (1.3) R2dE : 2.81 R2E : -1.31
β4 : 25.4 (8.69) R2dD*C : 1.68 R2D*C : -1.71
β5 : -25.5 (8.49) R2dD*E : 1.77 R2D*E : -1.79
γ1 : -1.08 (0.108) R2dN8 : 0.124 R2N8 : 0.0555
σ : 0.942
deviance : 401.59
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_____
C
peak time of C : 4.98
E
wheather : humidity
threshold : 70
memory length : 704
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 8.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
401.59 0.942 8.3 -3.65 5.33 -7.14 25.4 -25.5 -1.08 4.98 70 704 19 8.2
447.15 0.992 8.48 -3.34 1.78 -0.0839 0.206 -- -1.22 17.5 70 704 19 8.2
432.66 0.976 8.47 -3.32 2.09 0.646 -- 0.579 -1.22 15.9 73.86 849 16.2 13.5
434.38 0.971 8.43 -3.41 1.82 -1.2 -- -- -1.06 15.4 71 1200 17.1 14.5
459.76 0.999 8.44 -2.77 -- -1.69 -- -0.403 -0.947 -- 61.7 11999 19 11.8
447.38 0.992 8.48 -3.33 1.78 -- 0.147 -- -1.22 17.3 -- -- -- --
447.44 0.991 8.48 -3.33 1.78 -- -- -- -1.22 17.3 -- -- -- --
454.06 0.992 8.47 -2.82 -- -1.88 -- -- -1.06 -- 61.99 11980 19.5 11.5
598.31 1.14 8.47 -- 1.7 -1.47 -- -- -1 15.9 61 35789 17.3 14.9
612.91 1.16 8.46 -3.39 -- -- -- -- -1.26 -- -- -- -- --
739.78 1.27 8.4 -- 1.84 -- -- -- -0.848 17.2 -- -- -- --
702.47 1.23 8.34 -- -- -2.81 -- -- -0.673 -- 64.01 47520 14.5 16.2
916.45 1.41 8.37 -- -- -- -- -- -0.887 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.42 humidity 70.0 720 > th dose independent rect. 19 8
2 406.33 temperature 30.0 720 > th dose dependent rect. 18 1
31 409.65 radiation 1.0 30 < th dose dependent rect. 4 12
33 410.20 wind 1.0 90 < th dose independent rect. 4 1
34 410.20 wind 1.0 90 < th dose dependent rect. 4 1
36 410.68 radiation 1.0 30 < th dose dependent rect. 4 10
38 411.12 radiation 1.0 30 < th dose dependent rect. 4 4
45 412.64 humidity 50.0 1440 < th dose independent rect. 16 1
46 412.81 humidity 70.0 720 < th dose independent rect. 18 13
47 412.85 humidity 70.0 720 < th dose independent rect. 18 2
58 413.12 humidity 50.0 1440 < th dose dependent rect. 16 1
59 413.82 temperature 25.0 30 < th dose dependent rect. 4 1
62 414.66 radiation 1.0 30 < th dose dependent rect. 4 2
66 414.96 temperature 15.0 90 > th dose dependent rect. 4 1
79 415.16 humidity 90.0 90 > th dose dependent rect. 4 1
85 416.17 humidity 90.0 30 > th dose independent rect. 4 1
107 416.93 radiation 1.0 30 < th dose independent rect. 4 10
109 417.02 atmosphere 1010.0 30 < th dose dependent rect. 4 1
112 417.25 temperature 20.0 90 > th dose independent rect. 4 1
113 417.33 temperature 25.0 30 < th dose independent rect. 4 1
114 417.35 humidity 70.0 720 > th dose independent rect. 18 13
119 417.62 radiation 1.0 30 < th dose independent rect. 4 4
130 417.93 humidity 70.0 720 > th dose independent rect. 18 3
131 417.96 atmosphere 1005.0 30 > th dose independent rect. 4 1
137 418.23 temperature 30.0 720 > th dose independent rect. 18 1
153 418.35 humidity 70.0 720 < th dose dependent rect. 19 12
154 418.37 humidity 70.0 720 < th dose dependent rect. 19 1
197 419.22 temperature 10.0 30 > th dose independent rect. 4 1
200 419.22 humidity 50.0 30 > th dose independent rect. 4 1
204 419.22 atmosphere 1010.0 30 < th dose independent rect. 4 1
206 419.22 radiation 1.0 30 < th dose independent rect. 4 1
211 419.22 temperature 10.0 30 > th dose independent rect. 5 23
223 419.23 radiation 40.0 30 < th dose dependent rect. 4 1
229 419.35 precipitation 0.1 30 < th dose independent rect. 4 1
231 419.35 precipitation 0.1 30 < th dose dependent rect. 4 1
233 419.43 humidity 70.0 720 > th dose independent rect. 19 1
235 419.63 humidity 50.0 1440 > th dose independent rect. 16 1
239 419.95 temperature 30.0 720 < th dose independent rect. 18 8
245 420.33 humidity 90.0 10 > th dose independent rect. 4 10
249 420.34 atmosphere 995.0 30 > th dose dependent rect. 4 1
250 420.40 temperature 25.0 720 > th dose dependent rect. 21 2
262 420.95 humidity 90.0 10 > th dose independent rect. 4 8
265 420.99 wind 9.0 30 < th dose independent rect. 5 23
268 421.04 wind 1.0 14400 < th dose independent rect. 1 2
310 421.64 wind 1.0 30 < th dose independent rect. 4 6
316 421.83 humidity 90.0 10 > th dose independent rect. 4 6
348 422.81 temperature 20.0 270 > th dose independent rect. 24 23
356 423.00 temperature 10.0 720 > th dose dependent rect. 17 7
357 423.11 wind 3.0 1440 > th dose independent rect. 2 1
361 423.27 humidity 90.0 30 > th dose dependent rect. 4 16
363 423.30 wind 3.0 1440 < th dose independent rect. 2 1
399 423.89 temperature 20.0 30 > th dose independent rect. 3 22
418 424.03 humidity 90.0 10 > th dose independent rect. 4 4
426 424.15 humidity 90.0 30 > th dose dependent rect. 4 14
428 424.17 humidity 90.0 30 > th dose dependent rect. 4 10
449 424.38 temperature 20.0 270 < th dose independent rect. 24 22
460 424.48 humidity 90.0 30 > th dose dependent rect. 4 8
463 424.50 temperature 20.0 270 > th dose independent rect. 14 23
473 424.66 temperature 30.0 1440 < th dose independent rect. 18 2
481 424.79 temperature 30.0 1440 < th dose independent rect. 18 6
497 424.88 temperature 20.0 270 < th dose independent rect. 10 22
502 424.96 humidity 90.0 10 > th dose dependent rect. 4 6
532 425.08 humidity 70.0 10 > th dose dependent rect. 4 20
542 425.21 wind 1.0 30 > th dose independent rect. 1 7
551 425.29 wind 1.0 14400 > th dose independent rect. 1 2
578 425.45 temperature 10.0 720 > th dose independent rect. 7 8
579 425.45 atmosphere 1015.0 720 < th dose independent rect. 7 8
581 425.45 temperature 10.0 720 > th dose independent rect. 15 16
590 425.50 humidity 90.0 10 > th dose dependent rect. 4 4
612 425.58 temperature 30.0 1440 < th dose independent rect. 18 11
624 425.75 temperature 10.0 720 > th dose independent rect. 19 8
626 425.75 humidity 50.0 720 > th dose independent rect. 19 8
627 425.75 atmosphere 995.0 720 > th dose independent rect. 19 8
628 425.75 radiation 1.0 720 < th dose independent rect. 19 8
633 425.75 temperature 10.0 720 > th dose independent rect. 3 16
634 425.75 temperature 30.0 720 < th dose dependent rect. 19 2
635 425.75 radiation 10.0 720 < th dose dependent rect. 19 8
639 425.76 temperature 20.0 90 > th dose independent rect. 3 10
641 425.78 temperature 20.0 270 < th dose independent rect. 21 23
642 425.79 temperature 20.0 270 < th dose independent rect. 21 21
645 425.80 precipitation 0.1 30 < th dose independent rect. 5 23
646 425.80 precipitation 0.1 30 < th dose dependent rect. 5 23
653 425.91 wind 3.0 14400 < th dose independent rect. 23 1
655 425.93 wind 3.0 14400 > th dose independent rect. 23 1
662 425.97 wind 9.0 720 < th dose independent rect. 19 8
692 426.09 wind 1.0 90 < th dose dependent rect. 4 5
703 426.16 wind 1.0 90 < th dose dependent rect. 21 8
708 426.19 temperature 20.0 270 > th dose independent rect. 17 16
710 426.23 wind 1.0 90 < th dose dependent rect. 23 6
717 426.26 wind 1.0 30 < th dose independent rect. 24 6
733 426.35 temperature 20.0 270 < th dose independent no NA NA
743 426.39 temperature 30.0 1440 < th dose independent rect. 18 14
744 426.39 temperature 30.0 720 < th dose dependent rect. 19 4
749 426.42 wind 3.0 4320 > th dose dependent rect. 5 1
754 426.46 humidity 90.0 10 < th dose independent rect. 2 6
770 426.57 wind 7.0 1440 < th dose independent rect. 5 1
772 426.57 temperature 10.0 1440 > th dose independent rect. 5 1
775 426.57 temperature 30.0 1440 < th dose independent rect. 5 1
779 426.57 humidity 50.0 1440 > th dose independent rect. 5 1
788 426.57 atmosphere 995.0 1440 > th dose independent rect. 5 1
789 426.57 atmosphere 1015.0 1440 < th dose independent rect. 5 1
790 426.57 radiation 20.0 1440 < th dose independent rect. 5 1
801 426.57 temperature 10.0 1440 > th dose independent rect. 6 23
810 426.61 wind 1.0 90 < th dose dependent rect. 17 12
811 426.62 temperature 20.0 270 > th dose independent no NA NA
815 426.63 wind 1.0 1440 > th dose dependent rect. 2 1
816 426.63 humidity 80.0 4320 > th dose dependent rect. 11 3
830 426.69 wind 9.0 720 < th dose independent rect. 15 16
856 426.84 wind 9.0 1440 < th dose dependent rect. 2 1
878 426.97 temperature 30.0 720 < th dose dependent rect. 18 7
885 427.01 radiation 40.0 720 < th dose independent rect. 15 16
903 427.14 temperature 20.0 30 < th dose independent rect. 24 20
916 427.21 wind 1.0 90 < th dose dependent rect. 4 20
960 427.38 temperature 20.0 30 > th dose independent rect. 3 12
966 427.40 wind 1.0 10 < th dose independent rect. 3 21
979 427.43 temperature 20.0 90 > th dose independent rect. 6 23