BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0404900 Os04g0404900|AK107531
         (447 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47900.1  | chr5:19392408-19394963 FORWARD LENGTH=441          502   e-142
AT5G27730.1  | chr5:9820311-9822868 FORWARD LENGTH=473            348   5e-96

>AT5G47900.1 | chr5:19392408-19394963 FORWARD LENGTH=441
          Length = 440

 Score =  502 bits (1293), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/397 (63%), Positives = 308/397 (77%), Gaps = 5/397 (1%)

Query: 55  RQRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALA 114
           ++RLVSLDVFRG+TV  MILVDD G  LP+INHSPWDGVTLADFVMPFFLFIVGV+LA A
Sbjct: 43  KERLVSLDVFRGLTVAFMILVDDVGGILPSINHSPWDGVTLADFVMPFFLFIVGVSLAFA 102

Query: 115 YKRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIA 174
           YK +  +  ATRKA++R+LKL  +GL LQGGF HG+ +LT+GID+EKIRLMGILQRIAIA
Sbjct: 103 YKNLSCRFVATRKALIRSLKLLLLGLFLQGGFIHGLNNLTYGIDVEKIRLMGILQRIAIA 162

Query: 175 YIVTALCEIWLKGDDDVDSGFDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRI--S 232
           Y+V ALCEIWLKG+ +V S   ++K+ R+   +  ++   Y+  LYG YVPDWEY+I   
Sbjct: 163 YLVVALCEIWLKGNHNVSSELSMIKKYRFHWVVAFVITTIYLSLLYGLYVPDWEYQILKE 222

Query: 233 VPGSTEKSFF---VKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQ 289
             GST  +F    VKC VRG TGPGCNAVGM+DR  LGIQHLY +PVYAR+KQCSIN P 
Sbjct: 223 DQGSTLTTFLNLKVKCGVRGHTGPGCNAVGMLDRMFLGIQHLYRKPVYARTKQCSINYPN 282

Query: 290 NGPLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFS 349
           NGPL PDAPSWCQAPFDPEGLLSS+MA VTCL+GL YGH+I+HF+ HK+R+ +W++ SF 
Sbjct: 283 NGPLPPDAPSWCQAPFDPEGLLSSLMATVTCLVGLHYGHIIIHFKDHKKRLNQWILRSFC 342

Query: 350 MLILAFSLDFFGMHMNKPLYTVSYXXXXXXXXXXXXXXXXXXVDMYGHRRPTAVMEWMGT 409
           +L+L  +L+ FGMH+NKPLYT+SY                  VD+YG++R + V+EWMG 
Sbjct: 343 LLMLGLALNLFGMHLNKPLYTLSYMCVTSGASGFLLSAIYLMVDVYGYKRASLVLEWMGI 402

Query: 410 HALMIYVLIACNILPIFIHGFYWREPKNNLLRLIGVG 446
           HAL IYVLIACN++ + IHGFYW+ P NNLL LIG+G
Sbjct: 403 HALPIYVLIACNLVFLIIHGFYWKNPINNLLHLIGIG 439



>AT5G27730.1 | chr5:9820311-9822868 FORWARD LENGTH=473
          Length = 472

 Score =  348 bits (892), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 179/395 (45%), Positives = 250/395 (63%), Gaps = 6/395 (1%)

Query: 55  RQRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPFFLFIVGVALALA 114
           R RL SLD+FRG+TV LMILVDDAG   P I H+PW+G  LADFVMPFFLFIVGV++AL+
Sbjct: 34  RPRLASLDIFRGLTVALMILVDDAGGDWPMIAHAPWNGCNLADFVMPFFLFIVGVSIALS 93

Query: 115 YKRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIA 174
            KR+ NK EA +K   R  KL   GL+LQGGF H    LT+G+D+  +R  GILQRIA++
Sbjct: 94  LKRISNKFEACKKVGFRTCKLLFWGLLLQGGFSHAPDELTYGVDVTMMRFCGILQRIALS 153

Query: 175 YIVTALCEIWLKG--DDDVDSG-FDLLKRNRYQLFIGLIVMITYMGFLYGTYVPDWEYRI 231
           Y+V AL EI+ K   ++++ +G F + K   +   +   V++ Y+  LYGTYVPDWE+ +
Sbjct: 154 YLVVALVEIFTKDSHEENLSTGRFSIFKSYYWHWIVAASVLVIYLATLYGTYVPDWEFVV 213

Query: 232 SVPGST--EKSFFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQ 289
               S    K   V C VRG   P CNAVG +DR++LGI H+Y  P + RSK C+ +SP 
Sbjct: 214 YDKDSVLYGKILSVSCGVRGKLNPPCNAVGYVDRQVLGINHMYHHPAWRRSKACTDDSPY 273

Query: 290 NGPLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFS 349
            G +R DAPSWC+APF+PEG+LSS+ AI++ +IG+ +GH+I+H + H  R+  W+     
Sbjct: 274 EGAIRQDAPSWCRAPFEPEGILSSISAILSTIIGVHFGHIILHLKGHSARLKHWISTGLV 333

Query: 350 MLILAFSLDFFG-MHMNKPLYTVSYXXXXXXXXXXXXXXXXXXVDMYGHRRPTAVMEWMG 408
           +L L  +L F   M +NK LY+ SY                  VD+   +     ++W+G
Sbjct: 334 LLALGLTLHFTHLMPLNKQLYSFSYICVTSGAAALVFSSLYSLVDILEWKHMFLPLKWIG 393

Query: 409 THALMIYVLIACNILPIFIHGFYWREPKNNLLRLI 443
            +A+++YV+ A  IL  F +G+Y+R P N L+  I
Sbjct: 394 MNAMLVYVMGAEGILAAFFNGWYYRHPHNTLINWI 428



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.145    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,051,465
Number of extensions: 355404
Number of successful extensions: 832
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,310,137
Effective search space: 2866997265
Effective search space used: 2866997265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 113 (48.1 bits)