BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0341100 Os04g0341100|Os04g0341100
(208 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0341100 Aldo/keto reductase family protein 342 1e-94
Os04g0339400 Aldo/keto reductase family protein 224 3e-59
Os04g0338000 Similar to IN2-2 protein 220 7e-58
Os04g0337500 Aldo/keto reductase family protein 212 2e-55
Os10g0419100 Aldo/keto reductase family protein 178 3e-45
Os01g0618100 Similar to IN2-2 protein 165 2e-41
Os04g0338100 Similar to IN2-2 protein 109 1e-24
Os04g0337800 99 3e-21
>Os04g0341100 Aldo/keto reductase family protein
Length = 208
Score = 342 bits (877), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/208 (83%), Positives = 173/208 (83%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL
Sbjct: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
Query: 61 GIGIVGFLSSGPKIDLPRFQPENMEKNTVIFERVSVMATRKGCTASQLALAWVHHQGSDV 120
GIGIVGFLSSGPKIDLPRFQPENMEKNTVIFERVSVMATRKGCTASQLALAWVHHQGSDV
Sbjct: 61 GIGIVGFLSSGPKIDLPRFQPENMEKNTVIFERVSVMATRKGCTASQLALAWVHHQGSDV 120
Query: 121 CPIPGTSTTKGGQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPHHLEGLRD 180
CPIPGTSTTKGGQL QLPHHLEGLRD
Sbjct: 121 CPIPGTSTTKGGQLRPERGGAGRAPRGGGDGRARVVGGGGRAARGQVPRQLPHHLEGLRD 180
Query: 181 TAIVVLEGIRLNDNYTSVAMPPLSFLAL 208
TAIVVLEGIRLNDNYTSVAMPPLSFLAL
Sbjct: 181 TAIVVLEGIRLNDNYTSVAMPPLSFLAL 208
>Os04g0339400 Aldo/keto reductase family protein
Length = 355
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 118/145 (81%), Gaps = 18/145 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
MGELKKLVEEGKIKYIGLSEASASTIRRAH VHPITAVQ+EWSLWSRD EEDI+PTCREL
Sbjct: 150 MGELKKLVEEGKIKYIGLSEASASTIRRAHVVHPITAVQIEWSLWSRDVEEDIVPTCREL 209
Query: 61 GIGIV-------GFLSSGPKI-----------DLPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GF SSG K+ LPRFQPEN+EKN IFE+V+ MA RKG
Sbjct: 210 GIGIVAYSPLGRGFFSSGAKLVDELPDDDFRKSLPRFQPENLEKNAAIFEKVNAMAARKG 269
Query: 103 CTASQLALAWVHHQGSDVCPIPGTS 127
CT+SQLALAWVHHQGSDVCPIPGT+
Sbjct: 270 CTSSQLALAWVHHQGSDVCPIPGTT 294
>Os04g0338000 Similar to IN2-2 protein
Length = 351
Score = 220 bits (560), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 117/145 (80%), Gaps = 18/145 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
+GELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD EEDIIPTCREL
Sbjct: 146 IGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEDIIPTCREL 205
Query: 61 GIGIV-------GFLSSGPKI-----------DLPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GF S+G K+ +PRFQ EN+EKN IFERV+ MA RKG
Sbjct: 206 GIGIVAYSPLGRGFFSAGAKLVESLSDQDFRKHIPRFQQENLEKNAEIFERVNAMAARKG 265
Query: 103 CTASQLALAWVHHQGSDVCPIPGTS 127
CT SQLALAWVHHQGSDVCPIPGT+
Sbjct: 266 CTPSQLALAWVHHQGSDVCPIPGTT 290
>Os04g0337500 Aldo/keto reductase family protein
Length = 350
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/145 (73%), Positives = 116/145 (80%), Gaps = 18/145 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
+GELKKLVEEGKI+YIGL EASASTIRRAHAVHPITAVQLEWSLWSRD EEDI+PTCREL
Sbjct: 147 IGELKKLVEEGKIRYIGLCEASASTIRRAHAVHPITAVQLEWSLWSRDVEEDIVPTCREL 206
Query: 61 GIGIV-------GFLSSGPK-ID----------LPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GF SSG K +D +PRFQP N+EKN IFERV+ MA RKG
Sbjct: 207 GIGIVAYSPLGKGFFSSGAKLVDSLPDHDFRKLIPRFQPGNIEKNAEIFERVNEMAARKG 266
Query: 103 CTASQLALAWVHHQGSDVCPIPGTS 127
CT SQLALAW+HHQG DVCPIPGT+
Sbjct: 267 CTPSQLALAWIHHQGRDVCPIPGTT 291
>Os10g0419100 Aldo/keto reductase family protein
Length = 373
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 106/147 (72%), Gaps = 17/147 (11%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
MGELKKLVEEGK+K++GLSEASA TIRRAHAV+PITAVQ+EWSLW+RD EE+IIP CREL
Sbjct: 172 MGELKKLVEEGKVKFVGLSEASADTIRRAHAVYPITAVQMEWSLWTRDIEEEIIPLCREL 231
Query: 61 GIGIV-------GFLSSGPKIDL----------PRFQPENMEKNTVIFERVSVMATRKGC 103
GIGIV GF + + PR+ EN+EKN V + R+ +AT+ GC
Sbjct: 232 GIGIVPYSPIGRGFFAGRAAVQSIPSESWLTRHPRYNGENLEKNKVFYTRIEELATKYGC 291
Query: 104 TASQLALAWVHHQGSDVCPIPGTSTTK 130
+ +QLAL+WV HQG DV PIPGT+ K
Sbjct: 292 SPAQLALSWVLHQGDDVVPIPGTTKVK 318
>Os01g0618100 Similar to IN2-2 protein
Length = 344
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 103/147 (70%), Gaps = 17/147 (11%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
+GELKKLVEEGK++YIGLSEAS TIRRAHAVHPITAVQ+EWSLW+RD E +I+P CREL
Sbjct: 146 IGELKKLVEEGKVRYIGLSEASPDTIRRAHAVHPITAVQMEWSLWARDIEPEIVPLCREL 205
Query: 61 GIGIV-------GF---------LSSGPKID-LPRFQPENMEKNTVIFERVSVMATRKGC 103
GIGIV GF LS+ + PRF EN+EKN ++ + +A + C
Sbjct: 206 GIGIVPYSPIARGFFGGRGVTEQLSAESNLQGHPRFSAENLEKNKQLYLKTEELAKKHQC 265
Query: 104 TASQLALAWVHHQGSDVCPIPGTSTTK 130
+ +QLALAWV HQG DV PIPGT+ K
Sbjct: 266 SPAQLALAWVLHQGDDVVPIPGTTKIK 292
>Os04g0338100 Similar to IN2-2 protein
Length = 112
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/56 (94%), Positives = 54/56 (96%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPT 56
+GELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD EEDIIP
Sbjct: 57 IGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEDIIPN 112
>Os04g0337800
Length = 119
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 48/55 (87%)
Query: 73 KIDLPRFQPENMEKNTVIFERVSVMATRKGCTASQLALAWVHHQGSDVCPIPGTS 127
K +LPRFQPEN+EKN IF+RV+ MA RKGCTA+Q ALAW+HH+G DVCPIPGT+
Sbjct: 6 KENLPRFQPENLEKNAKIFDRVNAMAMRKGCTAAQFALAWIHHKGDDVCPIPGTT 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,944,505
Number of extensions: 191722
Number of successful extensions: 462
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 8
Length of query: 208
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 112
Effective length of database: 12,023,257
Effective search space: 1346604784
Effective search space used: 1346604784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)