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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0338100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to IN2-2 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.6 (0.0319) R2 : 0.986
β1 : 1.42 (0.119) R2dD : 0.00479 R2D : -0.254
β2 : 0.713 (0.082) R2dC : 0.00238 R2C : -0.276
β3 : -0.689 (0.0887) R2dE : 0.00203 R2E : -0.299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -11.7 (0.0687) R2dN8 : 1.25 R2N8 : 0.978
σ : 0.595
deviance : 163.05
__
_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 28.8
memory length : 1479
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.79 0.575 14.9 -0.676 0.649 0.475 -1.52 -10.3 -11.9 15.7 28.53 1279 -- --
161.25 0.591 14.6 1.32 0.607 -0.529 -1.09 -- -11.7 15.9 28.72 1373 -- --
155.52 0.581 14.9 -0.545 0.681 0.373 -- -9.1 -11.9 16.4 28.6 1410 -- --
163.05 0.595 14.6 1.42 0.713 -0.689 -- -- -11.7 16.4 28.8 1479 -- --
179.1 0.623 14.9 -0.685 -- 0.401 -- -10.3 -11.9 -- 28.59 1279 -- --
180.51 0.63 14.6 1.23 0.758 -- -1.17 -- -11.6 15.9 -- -- -- --
184.19 0.636 14.6 1.22 0.762 -- -- -- -11.6 16.3 -- -- -- --
187.85 0.638 14.6 1.4 -- -0.765 -- -- -11.7 -- 28.22 1252 -- --
212.42 0.679 14.7 -- 0.724 -0.526 -- -- -11.8 16.8 28.92 1029 -- --
215.56 0.686 14.6 1.19 -- -- -- -- -11.7 -- -- -- -- --
223.16 0.699 14.7 -- 0.739 -- -- -- -11.8 16.3 -- -- -- --
237.18 0.717 14.7 -- -- -0.557 -- -- -11.9 -- 31.2 1142 -- --
252.64 0.742 14.7 -- -- -- -- -- -11.8 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.69 humidity 70.0 14400 < th dose dependent rect. 17 2
48 146.96 humidity 70.0 14400 < th dose independent rect. 19 13
49 147.02 humidity 60.0 14400 > th dose independent rect. 17 2
50 147.08 humidity 50.0 14400 > th dose independent rect. 15 13
56 147.17 temperature 25.0 4320 < th dose independent rect. 4 4
57 147.18 humidity 50.0 14400 > th dose independent rect. 15 17
59 147.19 humidity 50.0 14400 > th dose independent rect. 15 8
62 147.23 humidity 50.0 14400 > th dose independent rect. 15 4
81 147.38 temperature 25.0 4320 > th dose dependent rect. 20 1
84 147.55 temperature 25.0 4320 > th dose independent rect. 4 4
86 147.61 humidity 60.0 14400 < th dose independent rect. 16 3
87 147.62 temperature 25.0 4320 > th dose dependent rect. 19 13
88 147.64 humidity 70.0 14400 > th dose independent rect. 17 11
89 147.65 humidity 70.0 14400 > th dose independent rect. 17 9
95 147.67 humidity 70.0 14400 > th dose independent rect. 17 6
99 147.67 temperature 25.0 4320 > th dose dependent rect. 19 4
114 147.81 temperature 25.0 4320 > th dose dependent rect. 19 6
136 147.91 humidity 70.0 14400 < th dose independent rect. 17 14
147 147.94 humidity 60.0 14400 < th dose independent rect. 16 16
164 147.98 temperature 25.0 4320 > th dose dependent rect. 19 11
175 148.11 temperature 25.0 4320 < th dose independent rect. 6 1
185 148.46 temperature 25.0 4320 > th dose independent rect. 1 7
198 148.59 humidity 50.0 14400 < th dose independent rect. 15 19
220 148.68 humidity 70.0 14400 < th dose dependent sin 12 NA
270 148.97 humidity 80.0 4320 < th dose dependent rect. 19 4
385 150.30 precipitation 0.1 43200 > th dose dependent rect. 16 2
388 150.33 precipitation 0.1 43200 > th dose dependent rect. 17 4
417 150.55 humidity 70.0 720 > th dose independent rect. 15 11
419 150.56 humidity 60.0 14400 < th dose independent sin 13 NA
420 150.56 temperature 30.0 1440 < th dose independent rect. 10 19
425 150.58 temperature 30.0 1440 < th dose independent sin 15 NA
426 150.58 temperature 30.0 1440 < th dose independent rect. 10 13
427 150.58 temperature 30.0 1440 < th dose independent rect. 10 17
432 150.60 temperature 30.0 1440 < th dose independent rect. 10 11
469 150.66 temperature 30.0 1440 < th dose independent rect. 15 23
480 150.71 humidity 50.0 14400 < th dose independent sin 11 NA
481 150.71 temperature 30.0 1440 > th dose independent rect. 11 8
511 150.78 temperature 30.0 1440 > th dose independent sin 16 NA
516 150.80 humidity 60.0 14400 > th dose independent sin 13 NA
542 150.86 temperature 30.0 1440 < th dose independent rect. 15 14
544 150.87 temperature 30.0 1440 < th dose independent rect. 15 16
553 150.90 temperature 30.0 1440 < th dose independent rect. 15 12
565 150.91 temperature 30.0 1440 < th dose independent rect. 15 8
576 150.95 temperature 30.0 1440 < th dose independent rect. 15 6
580 150.95 temperature 25.0 1440 > th dose dependent rect. 6 2
593 150.98 temperature 25.0 1440 > th dose dependent rect. 4 4
630 151.07 temperature 30.0 1440 < th dose independent rect. 2 21
634 151.08 temperature 30.0 1440 < th dose independent rect. 4 19
638 151.08 temperature 30.0 1440 < th dose independent rect. 4 23
640 151.08 temperature 30.0 1440 < th dose independent rect. 22 23
643 151.09 temperature 30.0 1440 < th dose independent rect. 2 19
650 151.10 temperature 30.0 1440 < th dose independent no NA NA
651 151.10 temperature 30.0 1440 < th dose independent rect. 4 17
675 151.11 temperature 30.0 1440 < th dose independent rect. 20 23
703 151.13 temperature 30.0 1440 < th dose independent rect. 18 21
775 151.29 temperature 30.0 1440 < th dose independent rect. 13 23
778 151.31 precipitation 0.1 43200 < th dose independent rect. 16 2
781 151.31 precipitation 0.1 43200 < th dose dependent rect. 16 2
783 151.32 temperature 30.0 1440 > th dose independent rect. 18 23
787 151.37 temperature 30.0 1440 > th dose independent no NA NA
880 151.38 precipitation 0.1 43200 > th dose independent rect. 16 2
890 151.42 temperature 30.0 1440 > th dose independent rect. 10 5
891 151.42 temperature 30.0 1440 > th dose independent rect. 15 23
896 151.43 temperature 30.0 1440 > th dose independent rect. 18 21
897 151.45 humidity 70.0 720 > th dose independent sin 16 NA
899 151.45 temperature 30.0 1440 > th dose independent rect. 15 4
919 151.47 temperature 30.0 1440 < th dose independent rect. 9 6
935 151.51 temperature 25.0 1440 > th dose dependent rect. 24 9
947 151.55 temperature 30.0 1440 < th dose independent rect. 15 21
987 151.67 temperature 30.0 1440 < th dose independent rect. 11 3