BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0859800 Os03g0859800|AK071971
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0859800 Ovarian tumour, otubain domain containing protein 525 e-149
Os03g0589300 Ovarian tumour, otubain domain containing protein 293 1e-79
Os02g0168600 Ovarian tumour, otubain domain containing protein 221 3e-58
Os06g0669800 Ovarian tumour, otubain domain containing protein 216 2e-56
Os02g0819500 Ovarian tumour, otubain domain containing protein 150 1e-36
>Os03g0859800 Ovarian tumour, otubain domain containing protein
Length = 302
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 257/302 (85%), Positives = 257/302 (85%)
Query: 1 MVVYEQDPDVLRWSXXXXXXXXXXXXYQQRTSSVDCDEMIAHAXXXXXXXXXXXXXXXXX 60
MVVYEQDPDVLRWS YQQRTSSVDCDEMIAHA
Sbjct: 1 MVVYEQDPDVLRWSLHLLLPPAAALHYQQRTSSVDCDEMIAHALQEELSYAQSQSLSSSI 60
Query: 61 XXXXXXXXXXKEDEQDDAXXXXXXFSSCSTPADYTNTNNHNAHDCLIEFVDDFSALDGQV 120
KEDEQDDA FSSCSTPADYTNTNNHNAHDCLIEFVDDFSALDGQV
Sbjct: 61 LHLPPSAPPLKEDEQDDAPPPPPPFSSCSTPADYTNTNNHNAHDCLIEFVDDFSALDGQV 120
Query: 121 GKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALSD 180
GKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALSD
Sbjct: 121 GKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALSD 180
Query: 181 QFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAADS 240
QFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAADS
Sbjct: 181 QFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAADS 240
Query: 241 YGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKRWW 300
YGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKRWW
Sbjct: 241 YGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKRWW 300
Query: 301 HF 302
HF
Sbjct: 301 HF 302
>Os03g0589300 Ovarian tumour, otubain domain containing protein
Length = 475
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 136/179 (75%), Positives = 152/179 (84%)
Query: 108 EFVDDFSALDGQVGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKV 167
EF A DG+ GK+L +MIPIPH+PK NGDIPS EAF+DHQRLL RL LYDLAE+KV
Sbjct: 294 EFRPGVDAHDGRAGKKLTNMIPIPHIPKINGDIPSAIEAFADHQRLLDRLVLYDLAEVKV 353
Query: 168 EGDGNCQFRALSDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGE 227
+GD NCQFRALSDQ Y TTEHHRFVRQQ+VKQLESYPEIYAGYVPMDYREYLKKM ++GE
Sbjct: 354 KGDRNCQFRALSDQMYHTTEHHRFVRQQVVKQLESYPEIYAGYVPMDYREYLKKMTEDGE 413
Query: 228 WGDHVTLQAAADSYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPE 286
WGDHVTLQAAAD YGVKI +LTS RDT YIE+LP QK + IC+SFWAEVHY+S+Y E
Sbjct: 414 WGDHVTLQAAADLYGVKITLLTSCRDTFYIEVLPADQKPKGEICISFWAEVHYDSVYAE 472
>Os02g0168600 Ovarian tumour, otubain domain containing protein
Length = 224
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/180 (55%), Positives = 132/180 (73%)
Query: 120 VGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALS 179
+GKRL + IPH P+ NG IP V+ A DH+ LL RL Y LAE ++EGDGNCQFRAL+
Sbjct: 43 LGKRLSHLDSIPHTPRVNGQIPDVNNATIDHETLLERLGTYGLAEFQIEGDGNCQFRALA 102
Query: 180 DQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAAD 239
DQ +R ++H+ VR+ +VKQL+ + + Y GYVPM+Y+ YLKKM ++GEWGDHVTLQAAAD
Sbjct: 103 DQIFRNPDYHKHVRKSVVKQLKEFRKHYEGYVPMEYKVYLKKMKRSGEWGDHVTLQAAAD 162
Query: 240 SYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKRW 299
+ KI +LTSFRDTC IEI+P + + LSFW+EVHYNS+Y +LP + ++K W
Sbjct: 163 RFAAKICLLTSFRDTCLIEIVPRGATPTKELWLSFWSEVHYNSLYATEDLPNRKTRKKHW 222
>Os06g0669800 Ovarian tumour, otubain domain containing protein
Length = 227
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 131/180 (72%)
Query: 120 VGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALS 179
+G+RL + IPH P+ NG IP++D A DH+RL RL Y LAE ++EGDGNCQFRAL+
Sbjct: 46 LGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEFQIEGDGNCQFRALA 105
Query: 180 DQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAAD 239
DQ +R ++H+ VR+ ++KQL+ + + Y YVPM+Y+ YLKKM ++GEWGDH+TLQAAAD
Sbjct: 106 DQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRSGEWGDHLTLQAAAD 165
Query: 240 SYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKRW 299
+G KI +LTSFRDTC IEI+P R + LSFW EVHYNS+Y +L + K+K W
Sbjct: 166 RFGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNSLYATDDLLTRKTKKKHW 225
>Os02g0819500 Ovarian tumour, otubain domain containing protein
Length = 213
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 88/113 (77%)
Query: 110 VDDFSALDGQVGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEG 169
DD +D +VGKR + M+P+PHVPK NG+IPSVDEA DH+RL RL LY+L E KV+G
Sbjct: 98 TDDSFPMDEEVGKRFYPMVPVPHVPKINGEIPSVDEATMDHERLTERLRLYELVEHKVKG 157
Query: 170 DGNCQFRALSDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKM 222
DGNCQFRALSDQ Y++ +HH FVRQQI+ QL+S + Y GYVPM Y +YL+K+
Sbjct: 158 DGNCQFRALSDQLYQSPDHHEFVRQQIMSQLKSNRDAYDGYVPMAYDDYLEKV 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,340,997
Number of extensions: 365151
Number of successful extensions: 657
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)