BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0858600 Os03g0858600|AK102241
(475 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0858600 Protein of unknown function DUF668 family protein 717 0.0
Os04g0169500 Protein of unknown function DUF668 family protein 125 5e-29
Os12g0146500 Protein of unknown function DUF668 family protein 117 2e-26
Os03g0270500 Protein of unknown function DUF668 family protein 89 1e-17
Os05g0457600 82 1e-15
Os01g0845000 Protein of unknown function DUF668 family protein 80 2e-15
>Os03g0858600 Protein of unknown function DUF668 family protein
Length = 475
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/475 (78%), Positives = 375/475 (78%)
Query: 1 MPMAIESWLTKVXXXXXXXXXXXXXXXXXXXXXXTVGILALEVATLMSKLVHLWRSXXXX 60
MPMAIESWLTKV TVGILALEVATLMSKLVHLWRS
Sbjct: 1 MPMAIESWLTKVRSAIISSKPSPSSSSSSSWRSKTVGILALEVATLMSKLVHLWRSLADA 60
Query: 61 XXXXXXXXXINLDGVRKLVSHHDXXXXXXXXXXXXXXXRVAAHSVAALATRCXXXXXXXX 120
INLDGVRKLVSHHD RVAAHSVAALATRC
Sbjct: 61 ALARLRHHLINLDGVRKLVSHHDAALLALACAELTDALRVAAHSVAALATRCADPFLRDF 120
Query: 121 XXXXXXXXXTGRDPHRWVSTWKDMDTRAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQ 180
TGRDPHRWVSTWKDMDTRAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQ
Sbjct: 121 ADAFADFADTGRDPHRWVSTWKDMDTRAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQ 180
Query: 181 TSSSRRLSATNISLAAEQQQLIFAKKQEVKHLKQTSLWSSTFDAVVSSLARAAFTILARI 240
TSSSRRLSATNISLAAEQQQLIFAKKQEVKHLKQTSLWSSTFDAVVSSLARAAFTILARI
Sbjct: 181 TSSSRRLSATNISLAAEQQQLIFAKKQEVKHLKQTSLWSSTFDAVVSSLARAAFTILARI 240
Query: 241 KLVFGAAHDHRPTTTPLHRSLTLSSAXXXXXXXXXXXXXXXRKSMSMDMGMGEALYLERQ 300
KLVFGAAHDHRPTTTPLHRSLTLSSA RKSMSMDMGMGEALYLERQ
Sbjct: 241 KLVFGAAHDHRPTTTPLHRSLTLSSAVHPSSVDVQVQPPVSRKSMSMDMGMGEALYLERQ 300
Query: 301 RQSGLLERSXXXXXXXXXXXXXXXXXXRYAWVIISIERMARSPRLVGAEERDELYGMLTA 360
RQSGLLERS RYAWVIISIERMARSPRLVGAEERDELYGMLTA
Sbjct: 301 RQSGLLERSAAALVPPPGTLGAAALAPRYAWVIISIERMARSPRLVGAEERDELYGMLTA 360
Query: 361 SVRAQLRARLSGTVAAAEPGLAGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTR 420
SVRAQLRARLSGTVAAAEPGLAGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTR
Sbjct: 361 SVRAQLRARLSGTVAAAEPGLAGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTR 420
Query: 421 EMETQTLVVQTLQMAERGKVEAAVAELLVGLNYLCRFHKEITTCRTRTCHHDDAP 475
EMETQTLVVQTLQMAERGKVEAAVAELLVGLNYLCRFHKEITTCRTRTCHHDDAP
Sbjct: 421 EMETQTLVVQTLQMAERGKVEAAVAELLVGLNYLCRFHKEITTCRTRTCHHDDAP 475
>Os04g0169500 Protein of unknown function DUF668 family protein
Length = 514
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 6/135 (4%)
Query: 329 YAWVIISIERMARSPRLVGAEERDELYGMLTASVRAQLRARLSGTV---AAAEPGLAGQW 385
YA ++I IE++ R P LVG E RD+LY ML +S+RA LR L V A + LA W
Sbjct: 361 YANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIYDAFLAHDW 420
Query: 386 RAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTREMETQTLVVQTLQMAERGKVEAAVA 445
R + L WLAPMAH +RWQAER+ EQQ+ ++ L++QTL A+R K EA +
Sbjct: 421 RETLEKTLTWLAPMAHNMIRWQAERNFEQQQIV---LKGNVLLLQTLYFADREKTEAVIC 477
Query: 446 ELLVGLNYLCRFHKE 460
ELLVGLNY+CR+ ++
Sbjct: 478 ELLVGLNYICRYEQQ 492
>Os12g0146500 Protein of unknown function DUF668 family protein
Length = 261
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 13/144 (9%)
Query: 329 YAWVIISIERMARSPRLVGAEERDELYGMLTASVRAQLRARL-----------SGTVAAA 377
YA +II IE++A +PR + +ERD LY MLT +RA LRARL S + +A
Sbjct: 91 YANLIIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNMAASSSSSSSAC 150
Query: 378 EPGLAGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTREMETQTLVVQTLQMAER 437
+P +A +W V IL WLAP+AH +RWQ+ER+ EQ + T L++QTL A++
Sbjct: 151 DPAMAAEWSGTVQRILGWLAPLAHNMLRWQSERNFEQ--RNVASSGTGVLLLQTLHFADQ 208
Query: 438 GKVEAAVAELLVGLNYLCRFHKEI 461
K EAA+ ELLVGLNYL + +E+
Sbjct: 209 KKSEAAIVELLVGLNYLWKAGREL 232
>Os03g0270500 Protein of unknown function DUF668 family protein
Length = 286
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 128/282 (45%), Gaps = 32/282 (11%)
Query: 204 AKKQEVKHLKQTSLWSSTFDAVVSSLARAAFTILARIKLVFGAAHDHRPTTTPLHRSLTL 263
+++Q+V+ L ++SLWS V +A++ +LARI + FGA P T + R+ L
Sbjct: 23 SQRQKVRRLMESSLWSVAAHKVSKLMAKSVLAVLARISITFGAYVPGLPLLT-VGRAWAL 81
Query: 264 SSAXXXXXXXXXXXXXXXRKSMSMDMGMGEALYLERQRQSGLLERSXXXXXXXXXXXXXX 323
+++ S + + + RQ+ + +
Sbjct: 82 -----------RRTSGPLQQAASPAAAIRHSAPIFRQKDTAF--SASESIKPPASTVGGS 128
Query: 324 XXXXRYAWVIISIERMARS--PRLVGAE--------ERDELYGMLTASVRAQLRARL--S 371
RYA +I+ E + R P + E +RDELY ML ++R ++A+L S
Sbjct: 129 GMELRYANMIVCAEMLLRQLWPTIHSNEVDAGMDLSKRDELYKMLPVTIRTAVKAKLRES 188
Query: 372 GTVAAAEPGLAGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTREMETQTLVVQT 431
+ A AV +L WL PMAH TVRW E S+E+ ++ + M + L+VQT
Sbjct: 189 WRGQPVDEAAAAASMDAVDRMLRWLGPMAHDTVRWHDEHSMERAQRFS--MRPRVLMVQT 246
Query: 432 LQMAERGKVEAAVAELLVGLNYLCRFHKEITTCRTRTCHHDD 473
L A+R K E + E+L+GL+ +C + E R R DD
Sbjct: 247 LHFADRHKAENVIVEVLIGLSCVCWYDDE----RRRPADWDD 284
>Os05g0457600
Length = 501
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 69/118 (58%), Gaps = 14/118 (11%)
Query: 349 EERDELYGMLTASVRAQLRARLSG-----TVAAA-----EPGLAGQWRAAVGGILEWLAP 398
E R ELY ML + +RA +RA+L G AAA + GLA WR+A G IL WLAP
Sbjct: 368 EARAELYAMLPSKLRAAVRAKLRGWWRERGAAAAVAVELDAGLAEGWRSAAGRILAWLAP 427
Query: 399 MAHATVRWQAERSLEQQRK----TTREMETQTLVVQTLQMAERGKVEAAVAELLVGLN 452
MA T RW AERSL++QR+ + +QTL+ A+ K EAAV E+LV L+
Sbjct: 428 MARDTARWHAERSLDRQRRFEVGGGGGGSARAWALQTLRWADAEKAEAAVVEVLVALS 485
>Os01g0845000 Protein of unknown function DUF668 family protein
Length = 300
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 328 RYAWVIISIERM----ARSPRLVGAEERDELYGMLTASVRAQLRARLSGTVAAAEP---G 380
+YA VI+S E++ A + ER E+Y ML A +RA +R++L P G
Sbjct: 155 QYANVIVSAEQLLQMEAEGRQEEANAERAEMYEMLPAKLRAAVRSKLRDWWRDPGPLDAG 214
Query: 381 LAGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTREMETQTLVVQTLQMAERGKV 440
LA W+ AV I+ WL PMA TV+WQAER++++ R+ + + +QTL+ A++ K
Sbjct: 215 LAQGWKDAVDRIMAWLGPMARDTVQWQAERNMDRTRRF--DGGARVYALQTLRWADKEKA 272
Query: 441 EAAVAELLVGLNYLCRFHK 459
EAA+ E+LV L+ +C + +
Sbjct: 273 EAALVEVLVALSCVCWYEE 291
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.127 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,081,106
Number of extensions: 323196
Number of successful extensions: 1088
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 7
Length of query: 475
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 370
Effective length of database: 11,553,331
Effective search space: 4274732470
Effective search space used: 4274732470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)