BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0836300 Os03g0836300|AK061174
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0836300 Harpin-induced 1 domain containing protein 409 e-115
Os07g0251200 Harpin-induced 1 domain containing protein 102 2e-22
Os03g0836400 Harpin-induced 1 domain containing protein 98 3e-21
Os07g0250900 Harpin-induced 1 domain containing protein 95 3e-20
Os07g0250501 91 9e-19
Os04g0685300 Harpin-induced 1 domain containing protein 72 3e-13
>Os03g0836300 Harpin-induced 1 domain containing protein
Length = 212
Score = 409 bits (1051), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/212 (94%), Positives = 201/212 (94%)
Query: 1 MAFWEDWGKGDCDCGWKKCLIWTAAIAGVGGLIXXXXXXXXXXXPPKATADDAVLLRLAL 60
MAFWEDWGKGDCDCGWKKCLIWTAAIAGVGGLI PPKATADDAVLLRLAL
Sbjct: 1 MAFWEDWGKGDCDCGWKKCLIWTAAIAGVGGLIVLLVFAFALVFPPKATADDAVLLRLAL 60
Query: 61 SPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRFDESATVPAFYHRPR 120
SPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRFDESATVPAFYHRPR
Sbjct: 61 SPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRFDESATVPAFYHRPR 120
Query: 121 KTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVMQYKARKARCPLAVI 180
KTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVMQYKARKARCPLAVI
Sbjct: 121 KTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVMQYKARKARCPLAVI 180
Query: 181 CPLQLQLVDPDVAATAFQRTKCTVLRAKKSGC 212
CPLQLQLVDPDVAATAFQRTKCTVLRAKKSGC
Sbjct: 181 CPLQLQLVDPDVAATAFQRTKCTVLRAKKSGC 212
>Os07g0251200 Harpin-induced 1 domain containing protein
Length = 271
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 46 PKATADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGI-SYDPVAVAFSFNGT 104
P T DDA L RLAL+ +P + ++YN ++ L+ RN N + + +P+ A+ F+G
Sbjct: 105 PSITVDDASLTRLALA-ATP--TTALAYNLSLALTFRNRNWAMSMKNVEPLEAAYRFDGQ 161
Query: 105 RFDESATVPAFYHR-PRKTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLD 163
+FD + P+KT + ++ G P L AGVA F+ ENATG FEVEV +
Sbjct: 162 QFDRIQLADKGAKQGPKKTVVYRLSSGSDAAAAPGLGNAGVAEFKKENATGTFEVEVGVT 221
Query: 164 TVMQYKARKARCPLAVICPLQLQLVDP--DVAATAFQRTKCTVLRAKKS 210
+ Y AR +C + C L+LQL P + AA FQ+ KC + +A+K+
Sbjct: 222 GKVSYTARITKCKIEATCKLKLQLAPPGQEPAAVVFQKVKCKLAKAEKN 270
>Os03g0836400 Harpin-induced 1 domain containing protein
Length = 209
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 47 KATADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRF 106
+ DDA L R A++ ++V+YN TV L +RNPN G++Y + ++ F+G RF
Sbjct: 50 RVAVDDASLTRFAVTA------TSVAYNLTVALVVRNPNWAMGVTYRSLEASYLFHGKRF 103
Query: 107 DESATV--PAFYHRPRKTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGR-FEVEVRLD 163
D +A V + RKT F ++ G P L + G +R E+ G F+VEV L
Sbjct: 104 DGAAAVVSSGYEQAARKTEVFRLSSGSDAAPAA-LGSGGEREYRKESDNGGVFDVEVDLS 162
Query: 164 TVMQYKARKARCPLAVICPLQLQLVDPDVAATAFQRTKCTVLRAKKSGC 212
++Y A C + CPL+LQL + AFQ T C +LR+ +SGC
Sbjct: 163 GEVKYALHSAWCRVEARCPLKLQL--AAAGSVAFQETTCDMLRSSQSGC 209
>Os07g0250900 Harpin-induced 1 domain containing protein
Length = 227
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 49 TADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGI-SYDPVAVAFSFNGTRFD 107
T + A L R LS SP + ++YN ++TL++RN N I + + +SF+G RF+
Sbjct: 66 TVESASLTRFNLS--SPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQRFE 123
Query: 108 ESATVPAFYHRPR-KTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVM 166
P KT +H+ + L AGVA F+ ENATG FEVEV + +
Sbjct: 124 RVKLAGEGEKHPAGKTRVYHLD-SSSDNAYAALGNAGVAEFKKENATGVFEVEVAVTGEV 182
Query: 167 QYKARKARCPLAVICPLQLQLVDPDVAATAFQRTKCTVLRAKKS 210
+Y+A +C LA CPL+LQL P A FQ+ KC + A K+
Sbjct: 183 RYQAHYTKCKLAATCPLKLQLAPPGTPAVVFQKVKCKLAAADKN 226
>Os07g0250501
Length = 205
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 46 PKATADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGI-SYDPVAVAFSFNGT 104
P DDA L R LS + S+++YN T+ L + N N + + P+ + F+G
Sbjct: 42 PTFVVDDASLTRFNLSAAA----SSIAYNLTLKLVVHNRNWAMSVKNTKPMDAEYKFDGQ 97
Query: 105 RFDESATVPAFYHR-PRKTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLD 163
F+ P KT ++ G G VP L AG +R E+A G FEVEV +
Sbjct: 98 PFERIQLADKGDKLGPGKTVVHRLSSGSEGAIVPALGNAGAQEYRKESAKGTFEVEVAIA 157
Query: 164 TVMQYKARKARCPLAVICPLQLQLVDPDVAATAFQRTKCTVLRAKKS 210
++Y AR +C + CPL+LQL P + AFQ+ KC + + +K+
Sbjct: 158 GEVRYTARLTKCKIEATCPLKLQLAPPGTTSVAFQKVKCKLTKPEKN 204
>Os04g0685300 Harpin-induced 1 domain containing protein
Length = 205
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 48 ATADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRFD 107
AT D A L + LS +NS ++Y+ TV L++RNPN G+ YD V F+G RF
Sbjct: 55 ATVDSAALTQFTLS-----TNSALAYSLTVDLTVRNPNKRVGLYYDNVESLALFDGQRFG 109
Query: 108 ESATVPAFYHRPRKTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVMQ 167
A + +FY + G +TAA FR++ G+F++EV+L+ ++
Sbjct: 110 Y-APLDSFYQSTEASTKLSPAFKGQQPLQGDITAAN---FRSQQTAGKFDIEVKLNAKLR 165
Query: 168 YKARKARCP---LAVICPLQLQLVDPDVAATAFQRTKCTV 204
K + P + CP+ + P+ A AFQRT C V
Sbjct: 166 VKVWAFKVPGPKAKISCPITVPASAPN--APAFQRTDCKV 203
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,337,434
Number of extensions: 280481
Number of successful extensions: 734
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 729
Number of HSP's successfully gapped: 6
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)