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Os07g0251200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.12 (0.0476) R2 : 0.479
β1 : -1.74 (0.176) R2dD : 0.119 R2D : 0.148
β2 : 1.66 (0.114) R2dC : 0.242 R2C : 0.232
β3 : -1.58 (0.178) R2dE : 0.0936 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00531 (0.102) R2dN8 : 7.08e-06 R2N8 : -0.00168
σ : 0.889
deviance : 364.48
__
_____
C
peak time of C : 22.5
E
wheather : humidity
threshold : 83.27
memory length : 1444
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.03 0.879 8.14 -1.87 1.69 -1.47 1.49 -1.95 -0.0229 22.5 84 1429 -- --
355.32 0.878 8.12 -1.68 1.66 -1.61 1.51 -- -0.0014 22.5 83.36 1445 -- --
358.94 0.882 8.13 -1.93 1.66 -1.43 -- -1.92 -0.0114 22.6 84.32 1449 -- --
364.48 0.889 8.12 -1.74 1.66 -1.58 -- -- -0.00531 22.5 83.27 1444 -- --
522.61 1.06 8.09 -1.91 -- -1.46 -- -1.47 0.00132 -- 86 1549 -- --
420.76 0.962 8.11 -1.92 1.65 -- 1.33 -- 0.0481 22.3 -- -- -- --
427.83 0.969 8.11 -1.98 1.64 -- -- -- 0.0435 22.4 -- -- -- --
525.63 1.07 8.07 -1.76 -- -1.58 -- -- 0.0218 -- 85.78 1546 -- --
439.98 0.977 8.09 -- 1.7 -1.83 -- -- 0.117 22.5 78.55 1425 -- --
592.89 1.14 8.06 -1.95 -- -- -- -- 0.0493 -- -- -- -- --
530.95 1.08 8.06 -- 1.63 -- -- -- 0.264 22.3 -- -- -- --
602.36 1.14 8.04 -- -- -1.82 -- -- 0.163 -- 82 1527 -- --
693.26 1.23 8.02 -- -- -- -- -- 0.266 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 338.28 humidity 70.0 43200 > th dose dependent rect. 9 18
2 338.55 wind 5.0 14400 < th dose dependent rect. 3 1
4 338.68 humidity 80.0 43200 > th dose dependent rect. 14 15
5 338.69 wind 3.0 14400 < th dose independent rect. 3 1
6 338.71 temperature 30.0 43200 > th dose dependent rect. 18 1
27 339.50 humidity 70.0 43200 > th dose dependent rect. 24 19
30 339.61 wind 3.0 14400 > th dose independent rect. 3 1
31 339.67 wind 5.0 14400 < th dose dependent rect. 2 3
34 339.81 humidity 80.0 43200 > th dose dependent sin 14 NA
45 340.25 humidity 80.0 43200 < th dose dependent rect. 22 1
47 340.27 humidity 80.0 43200 < th dose dependent rect. 4 3
48 340.29 humidity 80.0 43200 > th dose dependent rect. 20 4
53 340.51 humidity 80.0 43200 > th dose dependent rect. 17 10
54 340.67 humidity 80.0 43200 > th dose dependent rect. 19 6
65 341.20 humidity 70.0 43200 > th dose dependent rect. 1 15
74 341.42 humidity 80.0 43200 < th dose dependent rect. 22 10
75 341.43 wind 1.0 14400 < th dose dependent rect. 4 2
80 341.68 wind 3.0 43200 > th dose independent rect. 6 1
97 342.14 wind 1.0 14400 > th dose dependent rect. 3 1
115 342.59 humidity 80.0 43200 < th dose dependent rect. 5 1
131 342.97 humidity 90.0 43200 < th dose independent rect. 20 9
134 343.05 humidity 80.0 43200 > th dose dependent rect. 21 2
143 343.24 wind 3.0 43200 < th dose independent rect. 6 1
152 343.52 temperature 30.0 43200 < th dose independent rect. 2 7
153 343.58 humidity 80.0 43200 > th dose independent rect. 2 15
156 343.59 temperature 30.0 43200 < th dose independent rect. 4 5
169 343.82 humidity 80.0 43200 > th dose independent rect. 3 13
170 343.85 temperature 30.0 43200 < th dose independent rect. 24 9
177 344.02 temperature 30.0 43200 < th dose independent rect. 18 15
178 344.03 temperature 30.0 43200 < th dose independent rect. 20 13
181 344.06 humidity 80.0 43200 > th dose independent rect. 1 17
206 344.40 wind 1.0 43200 < th dose dependent rect. 19 11
207 344.41 humidity 70.0 43200 > th dose dependent sin 17 NA
224 344.68 wind 1.0 43200 > th dose dependent rect. 6 1
244 345.03 temperature 30.0 43200 > th dose independent rect. 18 15
269 345.52 temperature 30.0 43200 > th dose independent rect. 8 1
304 345.74 temperature 30.0 43200 < th dose independent rect. 18 3
308 345.81 humidity 70.0 43200 > th dose dependent sin 4 NA
314 345.90 humidity 80.0 43200 > th dose dependent rect. 20 19
318 345.94 temperature 30.0 43200 > th dose dependent rect. 8 1
341 346.04 wind 9.0 43200 < th dose independent rect. 12 3
342 346.06 temperature 30.0 43200 < th dose independent rect. 18 7
344 346.11 wind 1.0 43200 < th dose dependent rect. 22 7
350 346.20 temperature 30.0 43200 < th dose independent rect. 18 9
358 346.38 wind 9.0 43200 > th dose independent rect. 12 3
366 346.53 wind 3.0 43200 < th dose independent rect. 1 6
369 346.54 wind 9.0 43200 > th dose independent rect. 14 2
371 346.57 wind 1.0 14400 > th dose dependent rect. 24 5
376 346.60 wind 9.0 43200 < th dose dependent rect. 6 1
381 346.65 wind 3.0 43200 > th dose independent rect. 23 11
385 346.68 temperature 30.0 43200 > th dose independent rect. 18 1
399 346.68 humidity 70.0 43200 > th dose dependent no NA NA
401 346.69 humidity 80.0 43200 > th dose dependent sin 7 NA
402 346.70 humidity 90.0 43200 < th dose independent rect. 24 8
413 346.83 wind 7.0 43200 > th dose dependent rect. 11 6
433 346.89 precipitation 0.1 14400 < th dose independent rect. 8 9
435 346.89 precipitation 0.1 14400 < th dose dependent rect. 8 9
437 346.95 precipitation 0.1 14400 > th dose independent rect. 6 12
439 346.99 wind 3.0 43200 < th dose independent rect. 23 11
446 347.08 wind 9.0 43200 < th dose independent rect. 22 17
450 347.09 wind 3.0 43200 > th dose independent rect. 1 6
451 347.11 wind 3.0 43200 < th dose independent rect. 23 8
452 347.13 humidity 80.0 43200 > th dose independent rect. 4 2
453 347.13 precipitation 0.1 14400 > th dose independent rect. 8 9
456 347.15 precipitation 0.1 14400 < th dose independent rect. 6 12
458 347.15 precipitation 0.1 14400 < th dose dependent rect. 6 12
462 347.19 wind 3.0 43200 > th dose independent rect. 23 9
463 347.24 wind 3.0 43200 > th dose independent rect. 1 9
477 347.35 wind 3.0 43200 < th dose independent rect. 1 9
478 347.36 wind 9.0 43200 > th dose independent rect. 19 20
479 347.37 humidity 80.0 43200 < th dose independent rect. 5 1
493 347.46 wind 3.0 43200 > th dose independent rect. 20 12
496 347.50 humidity 80.0 43200 < th dose independent rect. 3 3
502 347.55 humidity 80.0 43200 > th dose independent sin 2 NA
506 347.59 wind 3.0 43200 > th dose independent rect. 20 14
507 347.62 wind 3.0 43200 > th dose independent sin 7 NA
510 347.64 humidity 80.0 43200 < th dose independent rect. 2 14
511 347.64 precipitation 0.1 43200 > th dose dependent rect. 19 2
547 347.82 radiation 1.0 43200 > th dose dependent rect. 4 2
558 347.83 wind 9.0 43200 < th dose independent rect. 19 20
560 347.84 wind 9.0 43200 < th dose independent rect. 10 7
602 348.13 wind 3.0 43200 < th dose independent sin 7 NA
609 348.17 wind 9.0 14400 < th dose independent rect. 9 2
614 348.18 wind 7.0 43200 > th dose dependent rect. 11 9
636 348.24 wind 3.0 43200 > th dose independent rect. 1 13
689 348.48 precipitation 0.1 43200 > th dose independent rect. 19 2
692 348.49 wind 9.0 43200 < th dose independent rect. 5 10
709 348.57 precipitation 0.1 14400 > th dose dependent rect. 6 11
735 348.70 wind 3.0 43200 > th dose independent rect. 5 5
779 348.87 wind 9.0 43200 < th dose independent rect. 10 10
789 348.94 wind 9.0 43200 > th dose independent rect. 22 17
813 349.05 temperature 25.0 43200 > th dose dependent rect. 22 1
820 349.07 wind 9.0 43200 > th dose independent rect. 24 15
837 349.17 precipitation 0.1 14400 > th dose independent sin 23 NA
845 349.21 humidity 80.0 43200 < th dose independent rect. 24 19
854 349.25 precipitation 0.1 14400 < th dose independent sin 23 NA
856 349.25 precipitation 0.1 14400 < th dose dependent sin 23 NA
857 349.25 precipitation 0.1 14400 > th dose dependent rect. 8 9
876 349.37 wind 9.0 43200 > th dose independent rect. 2 13
891 349.46 wind 3.0 43200 < th dose independent rect. 5 5
899 349.52 precipitation 0.1 43200 < th dose independent rect. 19 2
900 349.52 wind 9.0 43200 > th dose independent rect. 5 10
901 349.52 precipitation 0.1 43200 < th dose dependent rect. 19 2
903 349.52 wind 7.0 43200 > th dose dependent rect. 24 16
909 349.56 wind 7.0 43200 > th dose dependent rect. 22 18
978 349.84 wind 7.0 43200 > th dose dependent rect. 2 14
979 349.85 humidity 80.0 1440 < th dose dependent rect. 16 22
992 349.97 wind 9.0 43200 > th dose independent rect. 10 10