Os03g0836300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os03g0836300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.34 | 0.397 | 11.9 | 0.552 | 0.715 | 3.79 | 0.611 | -8.91 | 0.506 | 20.9 | 0.126 | 300 | -- | -- |
| 73.92 | 0.4 | 11.8 | 0.592 | 0.656 | 1.4 | 0.504 | -- | 0.494 | 20.6 | 0.003001 | 301 | -- | -- |
| 72.56 | 0.397 | 11.9 | 0.52 | 0.713 | 4.04 | -- | -9.42 | 0.51 | 20.8 | 0.3579 | 299 | -- | -- |
| 75.07 | 0.404 | 11.8 | 0.618 | 0.69 | 1.35 | -- | -- | 0.491 | 20.8 | 0.1825 | 307 | -- | -- |
| 100.73 | 0.467 | 11.8 | 0.53 | -- | 3.36 | -- | -5.94 | 0.502 | -- | 0.3192 | 301 | -- | -- |
| 79.11 | 0.417 | 11.8 | 0.752 | 0.729 | -- | 0.91 | -- | 0.468 | 20.9 | -- | -- | -- | -- |
| 81.91 | 0.424 | 11.8 | 0.721 | 0.728 | -- | -- | -- | 0.468 | 20.8 | -- | -- | -- | -- |
| 101.7 | 0.47 | 11.8 | 0.594 | -- | 1.63 | -- | -- | 0.491 | -- | 0.4982 | 310 | -- | -- |
| 84.31 | 0.428 | 11.8 | -- | 0.672 | 1.54 | -- | -- | 0.442 | 20.6 | 0.2286 | 404 | -- | -- |
| 112.03 | 0.495 | 11.8 | 0.721 | -- | -- | -- | -- | 0.463 | -- | -- | -- | -- | -- |
| 95.63 | 0.457 | 11.8 | -- | 0.726 | -- | -- | -- | 0.388 | 20.9 | -- | -- | -- | -- |
| 110.49 | 0.49 | 11.8 | -- | -- | 1.77 | -- | -- | 0.453 | -- | 0.4988 | 404 | -- | -- |
| 125.74 | 0.523 | 11.8 | -- | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.37 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 7 | 70.48 | wind | 5.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 10 | 70.56 | wind | 5.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 13 | 70.77 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 21 | 70.94 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 38 | 71.18 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 40 | 71.19 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 48 | 71.27 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 49 | 71.27 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 51 | 71.29 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 54 | 71.32 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 58 | 71.36 | wind | 1.0 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 62 | 71.37 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 63 | 71.39 | wind | 1.0 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 66 | 71.40 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 17 |
| 68 | 71.40 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 72 | 71.43 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 73 | 71.45 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 79 | 71.47 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 80 | 71.47 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 2 | 8 |
| 84 | 71.48 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 85 | 71.49 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 93 | 71.52 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 98 | 71.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 101 | 71.55 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 106 | 71.57 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 109 | 71.58 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 22 |
| 110 | 71.58 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 116 | 71.59 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 123 | 71.60 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 130 | 71.61 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 138 | 71.62 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 141 | 71.62 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 164 | 71.66 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 23 |
| 169 | 71.67 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 19 |
| 177 | 71.68 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 182 | 71.69 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 184 | 71.69 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 200 | 71.71 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 202 | 71.71 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 213 | 71.72 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 238 | 71.74 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 240 | 71.74 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 250 | 71.75 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 296 | 71.79 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 333 | 71.82 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 353 | 71.85 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 386 | 71.87 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 421 | 71.88 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 22 |
| 430 | 71.89 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 10 | 23 |
| 436 | 71.89 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 459 | 71.91 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 513 | 71.96 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 524 | 71.97 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 544 | 71.99 | precipitation | 0.1 | 270 | > th | dose independent | no | NA | NA |
| 545 | 71.99 | precipitation | 0.1 | 270 | < th | dose independent | no | NA | NA |
| 547 | 71.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 22 |
| 548 | 71.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 23 |
| 552 | 71.99 | wind | 7.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 555 | 71.99 | precipitation | 0.1 | 270 | < th | dose dependent | no | NA | NA |
| 591 | 72.00 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 8 | 21 |
| 594 | 72.01 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 618 | 72.02 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 641 | 72.03 | wind | 1.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 680 | 72.05 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 727 | 72.09 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 747 | 72.10 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 778 | 72.11 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 10 |
| 782 | 72.12 | precipitation | 0.1 | 270 | > th | dose independent | sin | 2 | NA |
| 797 | 72.12 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 815 | 72.14 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 817 | 72.14 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 851 | 72.15 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 901 | 72.18 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 906 | 72.18 | wind | 1.0 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 931 | 72.19 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 950 | 72.20 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 970 | 72.21 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 15 | 7 |