Os07g0250900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0250900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Harpin-induced 1 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.78 | 0.567 | 9.16 | -0.207 | 1.37 | -3.2 | 0.217 | -0.845 | 0.521 | 22.5 | 29.65 | 420 | 3.67 | 7.27 |
| 146.1 | 0.563 | 9.16 | -0.252 | 1.39 | -3.15 | 0.779 | -- | 0.515 | 22.5 | 29.72 | 420 | 3.72 | 7.2 |
| 145.87 | 0.563 | 9.15 | -0.198 | 1.38 | -3.18 | -- | -1.02 | 0.531 | 22.6 | 29.67 | 419 | 3.62 | 7.32 |
| 148.38 | 0.567 | 9.16 | -0.281 | 1.37 | -3.08 | -- | -- | 0.518 | 22.5 | 29.94 | 428 | 3.6 | 7.27 |
| 150.54 | 0.571 | 9.15 | -0.248 | -- | -4.18 | -- | -0.846 | 0.545 | -- | 38.47 | 390 | 2.72 | 9.76 |
| 222.42 | 0.699 | 9.13 | 0.0829 | 2.81 | -- | 0.153 | -- | 0.821 | 22.5 | -- | -- | -- | -- |
| 222.52 | 0.699 | 9.13 | 0.0767 | 2.81 | -- | -- | -- | 0.821 | 22.5 | -- | -- | -- | -- |
| 150.07 | 0.571 | 9.14 | -0.29 | -- | -4.12 | -- | -- | 0.504 | -- | 37.02 | 463 | 2.42 | 8.97 |
| 150.42 | 0.571 | 9.15 | -- | 1.38 | -3 | -- | -- | 0.558 | 22.5 | 30.23 | 420 | 3.67 | 7.25 |
| 708.68 | 1.24 | 9.06 | 0.127 | -- | -- | -- | -- | 0.833 | -- | -- | -- | -- | -- |
| 222.68 | 0.698 | 9.13 | -- | 2.81 | -- | -- | -- | 0.812 | 22.5 | -- | -- | -- | -- |
| 152.32 | 0.575 | 9.12 | -- | -- | -4.12 | -- | -- | 0.532 | -- | 37.28 | 467 | 2.41 | 8.97 |
| 709.11 | 1.24 | 9.06 | -- | -- | -- | -- | -- | 0.819 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 14 | 160.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 21 | 161.10 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 37 | 162.00 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 58 | 163.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 61 | 163.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 62 | 163.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 108 | 164.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 124 | 165.12 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 130 | 165.22 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 5 |
| 144 | 165.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 212 | 166.94 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 2 |
| 329 | 169.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 367 | 169.88 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 392 | 170.41 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 398 | 170.52 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 404 | 170.67 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 431 | 171.16 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 526 | 172.31 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 529 | 172.34 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 537 | 172.42 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 14 |
| 554 | 172.55 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 579 | 172.86 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 670 | 173.75 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 710 | 174.15 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 19 |
| 717 | 174.21 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 17 |
| 733 | 174.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 797 | 175.00 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 823 | 175.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 866 | 175.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 871 | 175.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 919 | 176.16 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |