BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0250900 Os07g0250900|AK107935
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0250900 Harpin-induced 1 domain containing protein 362 e-100
Os07g0250501 216 1e-56
Os07g0251200 Harpin-induced 1 domain containing protein 215 2e-56
Os03g0836400 Harpin-induced 1 domain containing protein 134 6e-32
Os03g0836300 Harpin-induced 1 domain containing protein 96 3e-20
>Os07g0250900 Harpin-induced 1 domain containing protein
Length = 227
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/198 (89%), Positives = 178/198 (89%)
Query: 30 TRETIFYXXXXXXXXXXXXXXXXXXXXYGFIRHVSITVESASLTRFNLSSPSEATALAYN 89
TRETIFY YGFIRHVSITVESASLTRFNLSSPSEATALAYN
Sbjct: 30 TRETIFYCAVCLLLVAAVVLLAVLLAAYGFIRHVSITVESASLTRFNLSSPSEATALAYN 89
Query: 90 LSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQRFERVKLAGEGEKHPAGKTRVYHLDSSSD 149
LSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQRFERVKLAGEGEKHPAGKTRVYHLDSSSD
Sbjct: 90 LSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQRFERVKLAGEGEKHPAGKTRVYHLDSSSD 149
Query: 150 NAYAALGNAGVAEFKKENATGVFEVEVAVTGEVRYQAHYTKCKLAATCPLKLQLAPPGTP 209
NAYAALGNAGVAEFKKENATGVFEVEVAVTGEVRYQAHYTKCKLAATCPLKLQLAPPGTP
Sbjct: 150 NAYAALGNAGVAEFKKENATGVFEVEVAVTGEVRYQAHYTKCKLAATCPLKLQLAPPGTP 209
Query: 210 AVVFQKVKCKLAAADKNC 227
AVVFQKVKCKLAAADKNC
Sbjct: 210 AVVFQKVKCKLAAADKNC 227
>Os07g0250501
Length = 205
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 131/172 (76%), Gaps = 3/172 (1%)
Query: 57 YGFIRHVSITVESASLTRFNLSSPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYS 116
+GF+R + V+ ASLTRFNLS+ A+++AYNL+L L V N+NWAMS+KNTK ++A Y
Sbjct: 36 FGFVRQPTFVVDDASLTRFNLSA--AASSIAYNLTLKLVVHNRNWAMSVKNTKPMDAEYK 93
Query: 117 FDGQRFERVKLAGEGEKHPAGKTRVYHLDSSSDNAYA-ALGNAGVAEFKKENATGVFEVE 175
FDGQ FER++LA +G+K GKT V+ L S S+ A ALGNAG E++KE+A G FEVE
Sbjct: 94 FDGQPFERIQLADKGDKLGPGKTVVHRLSSGSEGAIVPALGNAGAQEYRKESAKGTFEVE 153
Query: 176 VAVTGEVRYQAHYTKCKLAATCPLKLQLAPPGTPAVVFQKVKCKLAAADKNC 227
VA+ GEVRY A TKCK+ ATCPLKLQLAPPGT +V FQKVKCKL +KNC
Sbjct: 154 VAIAGEVRYTARLTKCKIEATCPLKLQLAPPGTTSVAFQKVKCKLTKPEKNC 205
>Os07g0251200 Harpin-induced 1 domain containing protein
Length = 271
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 131/174 (75%), Gaps = 4/174 (2%)
Query: 57 YGFIRHVSITVESASLTRFNLSSPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYS 116
+GF+ SITV+ ASLTR L++ + TALAYNLSL L RN+NWAMS+KN + LEA Y
Sbjct: 99 FGFVVQPSITVDDASLTRLALAA-TPTTALAYNLSLALTFRNRNWAMSMKNVEPLEAAYR 157
Query: 117 FDGQRFERVKLAGEGEKHPAGKTRVYHLDSSSDNAYA-ALGNAGVAEFKKENATGVFEVE 175
FDGQ+F+R++LA +G K KT VY L S SD A A LGNAGVAEFKKENATG FEVE
Sbjct: 158 FDGQQFDRIQLADKGAKQGPKKTVVYRLSSGSDAAAAPGLGNAGVAEFKKENATGTFEVE 217
Query: 176 VAVTGEVRYQAHYTKCKLAATCPLKLQLAPPG--TPAVVFQKVKCKLAAADKNC 227
V VTG+V Y A TKCK+ ATC LKLQLAPPG AVVFQKVKCKLA A+KNC
Sbjct: 218 VGVTGKVSYTARITKCKIEATCKLKLQLAPPGQEPAAVVFQKVKCKLAKAEKNC 271
>Os03g0836400 Harpin-induced 1 domain containing protein
Length = 209
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 9/166 (5%)
Query: 57 YGFIRHVSITVESASLTRFNLSSPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYS 116
YG + + + V+ ASLTRF ++ AT++AYNL++ L VRN NWAM + + LEA Y
Sbjct: 43 YGRVSSLRVAVDDASLTRFAVT----ATSVAYNLTVALVVRNPNWAMGV-TYRSLEASYL 97
Query: 117 FDGQRFE-RVKLAGEGEKHPAGKTRVYHLDSSSDNAYAALGNAGVAEFKKENATG-VFEV 174
F G+RF+ + G + A KT V+ L S SD A AALG+ G E++KE+ G VF+V
Sbjct: 98 FHGKRFDGAAAVVSSGYEQAARKTEVFRLSSGSDAAPAALGSGGEREYRKESDNGGVFDV 157
Query: 175 EVAVTGEVRYQAHYTKCKLAATCPLKLQLAPPGTPAVVFQKVKCKL 220
EV ++GEV+Y H C++ A CPLKLQLA G+ V FQ+ C +
Sbjct: 158 EVDLSGEVKYALHSAWCRVEARCPLKLQLAAAGS--VAFQETTCDM 201
>Os03g0836300 Harpin-induced 1 domain containing protein
Length = 212
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 66 TVESASLTRFNLS--SPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQRFE 123
T + A L R LS SP + ++YN ++TL++RN N I + + +SF+G RF+
Sbjct: 49 TADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGI-SYDPVAVAFSFNGTRFD 107
Query: 124 RVKLAGEGEKHPAGKTRVYHLD-SSSDNAYAALGNAGVAEFKKENATGVFEVEVAVTGEV 182
P KT +H+ + L AGVA F+ ENATG FEVEV + +
Sbjct: 108 ESATVPAFYHRPR-KTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVM 166
Query: 183 RYQAHYTKCKLAATCPLKLQLAPPGTPAVVFQKVKCKLAAADKN 226
+Y+A +C LA CPL+LQL P A FQ+ KC + A K+
Sbjct: 167 QYKARKARCPLAVICPLQLQLVDPDVAATAFQRTKCTVLRAKKS 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,638,264
Number of extensions: 209939
Number of successful extensions: 436
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 6
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)