Os03g0836400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os03g0836400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.68 | 0.344 | 2.91 | -0.011 | 0.0755 | 1.99 | -0.28 | 4.24 | 0.0422 | 8.54 | 17.37 | 773 | -- | -- |
| 58.08 | 0.358 | 2.88 | -0.0254 | 0.105 | -0.0265 | -0.0138 | -- | 0.0362 | 10 | 15.08 | 1018 | -- | -- |
| 53.76 | 0.341 | 2.91 | -0.00739 | 0.0828 | 2.24 | -- | 4.73 | 0.04 | 9.17 | 17 | 726 | -- | -- |
| 57.4 | 0.353 | 2.88 | 0.0407 | 0.0816 | 0.257 | -- | -- | 0.0686 | 9.95 | 21.81 | 777 | -- | -- |
| 54.11 | 0.343 | 2.91 | -0.0153 | -- | 2.3 | -- | 4.81 | 0.043 | -- | 17.04 | 628 | -- | -- |
| 58.08 | 0.357 | 2.88 | -0.0243 | 0.106 | -- | -0.0171 | -- | 0.0364 | 10 | -- | -- | -- | -- |
| 58.08 | 0.357 | 2.88 | -0.0249 | 0.106 | -- | -- | -- | 0.0365 | 10.1 | -- | -- | -- | -- |
| 57.78 | 0.354 | 2.88 | 0.0473 | -- | 0.282 | -- | -- | 0.0775 | -- | 22.5 | 777 | -- | -- |
| 57.44 | 0.353 | 2.88 | -- | 0.0843 | 0.234 | -- | -- | 0.063 | 9.79 | 21.92 | 776 | -- | -- |
| 58.75 | 0.358 | 2.89 | -0.0263 | -- | -- | -- | -- | 0.0363 | -- | -- | -- | -- | -- |
| 58.1 | 0.357 | 2.88 | -- | 0.106 | -- | -- | -- | 0.0392 | 10.1 | -- | -- | -- | -- |
| 57.83 | 0.354 | 2.88 | -- | -- | 0.257 | -- | -- | 0.0695 | -- | 22.65 | 777 | -- | -- |
| 58.77 | 0.358 | 2.89 | -- | -- | -- | -- | -- | 0.0392 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.80 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 9 | 2 |
| 5 | 50.87 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 8 | 50.96 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 9 | 51.00 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 39 | 51.07 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 41 | 51.15 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 43 | 51.15 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 9 | 2 |
| 63 | 51.19 | humidity | 60.0 | 720 | < th | dose independent | rect. | 8 | 2 |
| 103 | 51.25 | wind | 1.0 | 10 | < th | dose dependent | rect. | 8 | 4 |
| 107 | 51.28 | humidity | 60.0 | 30 | < th | dose independent | rect. | 17 | 17 |
| 117 | 51.29 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 18 | 16 |
| 126 | 51.30 | humidity | 60.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 408 | 51.37 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 3 |
| 413 | 51.38 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 416 | 51.38 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 470 | 51.49 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 538 | 51.58 | radiation | 40.0 | 30 | > th | dose dependent | sin | 11 | NA |
| 539 | 51.59 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 615 | 51.74 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 736 | 52.08 | radiation | 40.0 | 30 | > th | dose independent | rect. | 9 | 2 |
| 884 | 52.27 | radiation | 40.0 | 30 | > th | dose independent | sin | 11 | NA |
| 948 | 52.39 | wind | 9.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 966 | 52.44 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 969 | 52.45 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 975 | 52.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 978 | 52.46 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 979 | 52.46 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 983 | 52.46 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 985 | 52.46 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 987 | 52.46 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 992 | 52.46 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 993 | 52.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 994 | 52.46 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 999 | 52.46 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |