BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0823900 Os03g0823900|Os03g0823900
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0823900 Calmodulin binding protein-like family protein 604 e-173
Os03g0436300 Calmodulin binding protein-like family protein 226 2e-59
Os02g0177800 Similar to Calmodulin-binding protein 60-B (Fr... 106 2e-23
Os04g0444200 Similar to Calmodulin-binding protein 60-B (Fr... 101 8e-22
Os02g0562300 Calmodulin binding protein-like family protein 100 2e-21
Os08g0360300 71 1e-12
Os01g0134700 Calmodulin binding protein-like family protein 68 7e-12
>Os03g0823900 Calmodulin binding protein-like family protein
Length = 292
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MSQKRQLEESSGSRAEAWGPLAQPNLGLGARRRPTATGSPSIRWMITEVMQKSSIEKLFM 60
MSQKRQLEESSGSRAEAWGPLAQPNLGLGARRRPTATGSPSIRWMITEVMQKSSIEKLFM
Sbjct: 1 MSQKRQLEESSGSRAEAWGPLAQPNLGLGARRRPTATGSPSIRWMITEVMQKSSIEKLFM 60
Query: 61 AIEPLIRRMVKEEIESAFANHAIMMARTVMDVVPPTSKNFQLQFMTKLSLPIFTSSKIEG 120
AIEPLIRRMVKEEIESAFANHAIMMARTVMDVVPPTSKNFQLQFMTKLSLPIFTSSKIEG
Sbjct: 61 AIEPLIRRMVKEEIESAFANHAIMMARTVMDVVPPTSKNFQLQFMTKLSLPIFTSSKIEG 120
Query: 121 ESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFEDDSAIQQNIWIYWPSYSQTMQ 180
ESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFEDDSAIQQNIWIYWPSYSQTMQ
Sbjct: 121 ESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFEDDSAIQQNIWIYWPSYSQTMQ 180
Query: 181 ILGSGMSTKMWEVTVEHSKTCILTDKVHLYYPHSLIKTAVVFNVVGEVRGLISEKFVCAD 240
ILGSGMSTKMWEVTVEHSKTCILTDKVHLYYPHSLIKTAVVFNVVGEVRGLISEKFVCAD
Sbjct: 181 ILGSGMSTKMWEVTVEHSKTCILTDKVHLYYPHSLIKTAVVFNVVGEVRGLISEKFVCAD 240
Query: 241 DLMEKDKAEAHAAVKQAYENWKNVSTDGFGLSQSSIPSADIGSLSTGNCRKQ 292
DLMEKDKAEAHAAVKQAYENWKNVSTDGFGLSQSSIPSADIGSLSTGNCRKQ
Sbjct: 241 DLMEKDKAEAHAAVKQAYENWKNVSTDGFGLSQSSIPSADIGSLSTGNCRKQ 292
>Os03g0436300 Calmodulin binding protein-like family protein
Length = 572
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 133/165 (80%), Gaps = 6/165 (3%)
Query: 1 MSQKRQLEESSGSRAEAWGPLAQPNLGLGARRRPTATGSP------SIRWMITEVMQKSS 54
MSQKRQ EESSG GP G G+ P G P ++R +ITEVM+KSS
Sbjct: 1 MSQKRQPEESSGGVGGGMGPPVPAESGAGSSSPPHRRGEPKRQRVPALREVITEVMRKSS 60
Query: 55 IEKLFMAIEPLIRRMVKEEIESAFANHAIMMARTVMDVVPPTSKNFQLQFMTKLSLPIFT 114
IEKLF AIEPLIRR+VKEEIESAFANHA MMARTVMDVVP +SKNFQLQFMTKLSLPIFT
Sbjct: 61 IEKLFTAIEPLIRRVVKEEIESAFANHATMMARTVMDVVPSSSKNFQLQFMTKLSLPIFT 120
Query: 115 SSKIEGESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFE 159
SKIEGESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFE
Sbjct: 121 GSKIEGESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFE 165
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/140 (67%), Positives = 99/140 (70%), Gaps = 35/140 (25%)
Query: 180 QILGSGMSTKMWEVTVEHSKTCILTDKVHLYYPHSLIKTAVVFNVVGEVRGLISEKFVCA 239
+ILGSGMSTKMWEVTVEHSKTCIL DKVHLYYP SL KTAVVFNVVGEVRGLISEKFVCA
Sbjct: 310 KILGSGMSTKMWEVTVEHSKTCILPDKVHLYYPDSLSKTAVVFNVVGEVRGLISEKFVCA 369
Query: 240 DDLMEKDKAEAHAAVKQAYENWKN-----------------------------------V 264
DDL EK+KAEA+AAVKQAYENWKN V
Sbjct: 370 DDLREKEKAEAYAAVKQAYENWKNVFTCDNETLLANPSQLLDVRTTSLHENDYDQFPTQV 429
Query: 265 STDGFGLSQSSIPSADIGSL 284
STDGFGLSQSSIPS DI S+
Sbjct: 430 STDGFGLSQSSIPSPDIFSI 449
>Os02g0177800 Similar to Calmodulin-binding protein 60-B (Fragment)
Length = 624
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 17/164 (10%)
Query: 1 MSQKRQLEESSGSRAEAWGPLAQPNLGLGARRRPTATGSPSIRWMITEVMQKSSIEKLFM 60
M +KR LE A A G P R RP P++ +I E ++ S+++L
Sbjct: 1 MKEKRGLE------AAAAGGDGHPE---AKRARP-----PALASVIVEALKVDSLQRLCS 46
Query: 61 AIEPLIRRMVKEEIESAFA--NHAIMMARTVMDVVP-PTSKNFQLQFMTKLSLPIFTSSK 117
++EP++RR+V EE+E A A + R+ + P +N QLQF T+LSLP+FT K
Sbjct: 47 SLEPILRRVVSEEVERALGRLGPATITGRSSPKRIEGPDGRNLQLQFRTRLSLPLFTGGK 106
Query: 118 IEGESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFEDD 161
+EGE +I + L+D T VV+SG ES K++IVVLEGDF ++
Sbjct: 107 VEGEQGAAIHVVLLDAGTGCVVSSGPESCAKLDIVVLEGDFNNE 150
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 181 ILGSGMSTKMWEVTVEHSKTCILTDKVHLYYPHSLIKTAVVFNVVGEVRGLIS-EKFVCA 239
ILGSGMS KMW++ VEH+KTC+L+ K ++YY +FN + GLIS E+F +
Sbjct: 294 ILGSGMSNKMWDILVEHAKTCVLSGKYYIYYSDENRSIGAIFNNIYAFCGLISGEQFYSS 353
Query: 240 DDLMEKDKAEAHAAVKQAYENW 261
+ L + K A A VK+AY+NW
Sbjct: 354 ESLDDSQKLFADALVKKAYDNW 375
>Os04g0444200 Similar to Calmodulin-binding protein 60-B (Fragment)
Length = 652
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 32 RRPTATGSPSIRWMITEVMQKSSIEKLFMAIEPLIRRMVKEEIESAFA--NHAIMMARTV 89
R P P++ +I E ++ S++KL ++EP++RR+V EE+E A A A AR
Sbjct: 29 RAPKRPRVPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAATPARIQ 88
Query: 90 MDVVP-----PTSKNFQLQFMTKLSLPIFTSSKIEGESSLSITIALVDTVTREVVASGDE 144
P P+ N QLQF ++LSLP+FT K+EGE +I + L+D T VV SG E
Sbjct: 89 GRSSPKRIEGPSGINLQLQFRSRLSLPLFTGGKVEGEQGAAIHVVLLDANTGRVVTSGPE 148
Query: 145 SLMKVEIVVLEGDF 158
S K++++VLEGDF
Sbjct: 149 SFAKLDVLVLEGDF 162
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 181 ILGSGMSTKMWEVTVEHSKTCILTDKVHLYYPHSLIKTAVVFNVVGEVRGLIS-EKFVCA 239
ILGS MS KMWE VEH+KTC+L+ K ++YY +FN + E GLI+ ++++ A
Sbjct: 309 ILGSNMSNKMWESLVEHAKTCVLSGKHYIYYSSDARSVGAIFNNIYEFTGLIADDQYISA 368
Query: 240 DDLMEKDKAEAHAAVKQAYENWKNV 264
++L E + A VKQAY++W NV
Sbjct: 369 ENLSENQRLFADTLVKQAYDDWINV 393
>Os02g0562300 Calmodulin binding protein-like family protein
Length = 652
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 83/134 (61%), Gaps = 6/134 (4%)
Query: 30 ARRRPTATGSPSIRWMITEVMQKSSIEKLFMAIEPLIRRMVKEEIESAFA--NHAIMMAR 87
A +RP P++ +I E ++ S++KL ++EP++RR+V EE+E A A A + R
Sbjct: 31 AAKRPRV---PALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARIQGR 87
Query: 88 TVMDVVP-PTSKNFQLQFMTKLSLPIFTSSKIEGESSLSITIALVDTVTREVVASGDESL 146
+ + P +N QL+F T+LSLP+FT K+EGE +I + L+D T V SG ES
Sbjct: 88 SSPKRIEGPDGRNLQLKFTTRLSLPLFTGGKVEGEQGAAIHVVLLDANTGVAVTSGPESC 147
Query: 147 MKVEIVVLEGDFED 160
K++++VLEGDF +
Sbjct: 148 AKLDVLVLEGDFNN 161
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 181 ILGSGMSTKMWEVTVEHSKTCILTDKVHLYYPHSLIKTAVVFNVVGEVRGLIS-EKFVCA 239
ILGSGMS KMWE VEH+KTC+L+ K ++YY +FN + E GLI+ ++F+ A
Sbjct: 306 ILGSGMSNKMWESLVEHAKTCVLSGKHYVYYAIDSRNVGAIFNNIYEFTGLIADDQFISA 365
Query: 240 DDLMEKDKAEAHAAVKQAYENWKNV 264
++L + K A VK+AYE+W +V
Sbjct: 366 ENLTDNQKIYADGLVKKAYEDWMHV 390
>Os08g0360300
Length = 520
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 20/145 (13%)
Query: 29 GARR-RPTATGSPSIRWMITEVMQKSSIEKLFMAIEPLIRRMVKEEIESAFANHAIMMAR 87
GARR RP S R ++ + +I+++ + +EP+IRR+V+EEI + F + +
Sbjct: 33 GARRLRPVL----SFRSVVRRAVAAETIQQIVLNLEPVIRRVVREEIRNIFPQYGHDLPH 88
Query: 88 TVM-------DVVPPTSKNFQLQFMTKLSLPIFTSSKIEGESSLSITIALVDTVTREVVA 140
+ V PP +L F +L LPIFT++K+ + I I LVDT T +V
Sbjct: 89 RSLPLQIQDVGVSPP----LKLVFTKQLKLPIFTNNKLVDIDNNPIEIQLVDTRTNLIVT 144
Query: 141 SGDESL----MKVEIVVLEGDFEDD 161
+ L +K+E++VL+GDF D
Sbjct: 145 PSNTHLGYSAIKLEVLVLDGDFRYD 169
>Os01g0134700 Calmodulin binding protein-like family protein
Length = 438
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 40 PSIRWMITEVMQKSSIEKLFMAIEPLIRRMVKEEIESAFANHAIMMARTVMDVVPPTSKN 99
PS +I E + ++ LF+A+EPL+RR+V+EE+++ + R + P
Sbjct: 25 PSFSTVIREALMVKQMQTLFVALEPLLRRVVQEELQAGLVRSPRYIERMSPETPPAQPPM 84
Query: 100 FQLQFMTKLSLPIFTSSKIEGESSLSITIALVDTVTREVVASGDESLMKVEIVVLEGDFE 159
++L F K LPIFT SKIE + + I LVD T + ++VE+V + GDF
Sbjct: 85 WKLAFRFKPQLPIFTGSKIEDVNGNPLEIILVDVDTG--APATISQPLRVEVVPVLGDFP 142
Query: 160 DDS 162
D
Sbjct: 143 PDD 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,309,574
Number of extensions: 348404
Number of successful extensions: 984
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 11
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)