Os01g0134700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin binding protein-like family protein.
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Os01g0134700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin binding protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 423.27 | 0.967 | 8.08 | 2.72 | 0.908 | 6.81 | 2.04 | -13.4 | 1.25 | 19.5 | -0.6829 | 528 | -- | -- |
| 448.97 | 0.987 | 8.05 | 2.97 | 0.765 | 4.55 | 1.24 | -- | 1.1 | 18.7 | -0.4176 | 300 | -- | -- |
| 434.59 | 0.971 | 8.09 | 2.62 | 0.903 | 7.45 | -- | -15.1 | 1.25 | 19.5 | -0.3513 | 528 | -- | -- |
| 442.54 | 0.98 | 8 | 2.89 | 0.87 | 3.93 | -- | -- | 1.23 | 19.2 | 0.05433 | 421 | -- | -- |
| 475.89 | 1.02 | 8.07 | 2.58 | -- | 8.93 | -- | -17.7 | 1.24 | -- | -0.06769 | 424 | -- | -- |
| 478.34 | 1.03 | 8.02 | 3.25 | 0.97 | -- | 2.67 | -- | 1.15 | 20 | -- | -- | -- | -- |
| 499.24 | 1.05 | 8.02 | 3.17 | 0.974 | -- | -- | -- | 1.15 | 19.8 | -- | -- | -- | -- |
| 481.83 | 1.02 | 7.98 | 2.82 | -- | 4.2 | -- | -- | 1.22 | -- | 0.05712 | 421 | -- | -- |
| 632.81 | 1.17 | 8.04 | -- | 0.712 | 3.56 | -- | -- | 1.03 | 18.9 | -0.1626 | 1982 | -- | -- |
| 550.55 | 1.1 | 8 | 3.16 | -- | -- | -- | -- | 1.14 | -- | -- | -- | -- | -- |
| 764.9 | 1.29 | 8.1 | -- | 0.952 | -- | -- | -- | 0.799 | 20 | -- | -- | -- | -- |
| 666.8 | 1.2 | 8.02 | -- | -- | 3.15 | -- | -- | 1.04 | -- | 0.2127 | 1981 | -- | -- |
| 814.45 | 1.33 | 8.07 | -- | -- | -- | -- | -- | 0.788 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 398.68 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 2 | 399.73 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 9 | 405.24 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 12 | 405.42 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 16 | 405.59 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 19 | 405.67 | wind | 9e+00 | 43200 | < th | dose independent | sin | 12 | NA |
| 21 | 405.68 | wind | 9e+00 | 43200 | > th | dose independent | sin | 12 | NA |
| 23 | 405.93 | wind | 5e+00 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 26 | 406.08 | wind | 7e+00 | 43200 | > th | dose dependent | sin | 12 | NA |
| 31 | 406.62 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 35 | 406.84 | wind | 5e+00 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 40 | 406.99 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 41 | 406.99 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 42 | 407.00 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 43 | 407.01 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 44 | 407.08 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 54 | 407.36 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 67 | 407.81 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 73 | 407.93 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 76 | 407.97 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 85 | 408.20 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 110 | 408.80 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 118 | 408.89 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 125 | 409.02 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 128 | 409.07 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 129 | 409.10 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 139 | 409.20 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 142 | 409.25 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 147 | 409.35 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 153 | 409.44 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 202 | 410.19 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 206 | 410.25 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 208 | 410.25 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 228 | 410.56 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 243 | 410.81 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 263 | 411.10 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 284 | 411.45 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 291 | 411.61 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 19 | 16 |
| 329 | 412.17 | radiation | 1e+01 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 336 | 412.29 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 350 | 412.50 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 395 | 413.00 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 410 | 413.20 | radiation | 1e+01 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 443 | 413.60 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 11 | 22 |
| 453 | 413.74 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 457 | 413.78 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 464 | 413.83 | wind | 7e+00 | 43200 | > th | dose dependent | no | NA | NA |
| 490 | 414.01 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 499 | 414.07 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 509 | 414.13 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 512 | 414.14 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 6 | 12 |
| 557 | 414.40 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 563 | 414.43 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 565 | 414.45 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 10 | 9 |
| 596 | 414.67 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 602 | 414.69 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 609 | 414.72 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 630 | 414.92 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 636 | 414.96 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 659 | 415.09 | wind | 9e+00 | 43200 | < th | dose independent | no | NA | NA |
| 665 | 415.11 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 672 | 415.13 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 673 | 415.13 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 688 | 415.18 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 692 | 415.19 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 10 | 13 |
| 717 | 415.24 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 728 | 415.29 | precipitation | 1e-01 | 14400 | > th | dose dependent | sin | 17 | NA |
| 796 | 415.48 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 835 | 415.59 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 10 | 17 |
| 840 | 415.61 | wind | 7e+00 | 43200 | > th | dose independent | no | NA | NA |
| 871 | 415.70 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 895 | 415.76 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 8 | 19 |
| 896 | 415.77 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 918 | 415.84 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 936 | 415.90 | precipitation | 1e-01 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 939 | 415.91 | precipitation | 1e-01 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 940 | 415.91 | precipitation | 1e-01 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 960 | 415.98 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 963 | 415.98 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 13 | 5 |