Os03g0823900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin binding protein-like family protein.
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Os03g0823900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin binding protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.16 | 0.349 | 9.51 | -1.56 | 0.746 | -1.19 | 0.118 | -0.152 | 0.117 | 4.57 | 27.33 | 90 | -- | -- |
| 55.19 | 0.346 | 9.51 | -1.58 | 0.741 | -1.18 | 0.0773 | -- | 0.117 | 4.6 | 27.4 | 92 | -- | -- |
| 55.19 | 0.346 | 9.51 | -1.57 | 0.747 | -1.19 | -- | -0.0797 | 0.116 | 4.57 | 27.4 | 92 | -- | -- |
| 55.19 | 0.346 | 9.52 | -1.58 | 0.747 | -1.18 | -- | -- | 0.111 | 4.58 | 27.4 | 92 | -- | -- |
| 73.23 | 0.399 | 9.49 | -1.45 | -- | -0.939 | -- | -0.129 | 0.245 | -- | 24.1 | 43 | -- | -- |
| 74.63 | 0.405 | 9.46 | -1.29 | 0.475 | -- | 0.0273 | -- | 0.369 | 5.83 | -- | -- | -- | -- |
| 74.63 | 0.405 | 9.46 | -1.29 | 0.475 | -- | -- | -- | 0.369 | 5.82 | -- | -- | -- | -- |
| 73.27 | 0.399 | 9.5 | -1.47 | -- | -0.91 | -- | -- | 0.239 | -- | 24.1 | 43 | -- | -- |
| 113.78 | 0.5 | 9.45 | -- | 0.543 | -0.527 | -- | -- | 0.411 | 5.04 | 26.93 | 47 | -- | -- |
| 86.33 | 0.434 | 9.46 | -1.27 | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
| 118.28 | 0.509 | 9.43 | -- | 0.455 | -- | -- | -- | 0.512 | 5.96 | -- | -- | -- | -- |
| 126.26 | 0.525 | 9.44 | -- | -- | -0.41 | -- | -- | 0.47 | -- | 23.7 | 6 | -- | -- |
| 129.02 | 0.53 | 9.43 | -- | -- | -- | -- | -- | 0.521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 2 | 55.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 5 | 55.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 15 | 56.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 18 | 56.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 22 | 56.38 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 25 | 56.38 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 32 | 56.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 35 | 56.42 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 37 | 56.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 38 | 56.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 43 | 56.47 | humidity | 50 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 61 | 56.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 71 | 56.58 | humidity | 50 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 79 | 56.64 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 141 | 56.80 | humidity | 50 | 14400 | < th | dose dependent | sin | 7 | NA |
| 351 | 57.37 | humidity | 50 | 14400 | < th | dose dependent | no | NA | NA |
| 490 | 57.44 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 491 | 57.44 | temperature | 25 | 90 | < th | dose dependent | sin | 21 | NA |
| 513 | 57.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 532 | 57.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 542 | 57.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 583 | 57.84 | humidity | 50 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 610 | 57.87 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 631 | 57.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 649 | 57.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 668 | 57.92 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 675 | 57.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 694 | 57.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 706 | 57.96 | humidity | 50 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 708 | 57.96 | humidity | 50 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 804 | 58.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 13 |
| 813 | 58.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 824 | 58.09 | humidity | 60 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 851 | 58.12 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 862 | 58.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 892 | 58.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |