Os02g0562300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin binding protein-like family protein.
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Os02g0562300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin binding protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.47 | 0.246 | 13.2 | -0.0994 | 0.412 | 0.462 | -0.497 | -0.703 | 0.348 | 13.8 | 17.05 | 1310 | -- | -- |
| 28.58 | 0.249 | 13.2 | -0.136 | 0.403 | 0.466 | -0.645 | -- | 0.347 | 13.7 | 17.04 | 1302 | -- | -- |
| 28.01 | 0.247 | 13.2 | -0.0821 | 0.43 | 0.466 | -- | -0.968 | 0.349 | 14.3 | 16.86 | 1248 | -- | -- |
| 29.94 | 0.255 | 13.2 | -0.173 | 0.417 | 0.489 | -- | -- | 0.339 | 14.3 | 17.05 | 1276 | -- | -- |
| 37.57 | 0.285 | 13.2 | -0.00305 | -- | 0.541 | -- | -1.15 | 0.358 | -- | 15.67 | 1246 | -- | -- |
| 35.38 | 0.279 | 13.3 | -0.244 | 0.491 | -- | -0.557 | -- | 0.206 | 13.4 | -- | -- | -- | -- |
| 36.6 | 0.283 | 13.3 | -0.262 | 0.494 | -- | -- | -- | 0.203 | 13.6 | -- | -- | -- | -- |
| 39.04 | 0.291 | 13.2 | -0.194 | -- | 0.566 | -- | -- | 0.329 | -- | 17.1 | 1264 | -- | -- |
| 30.72 | 0.258 | 13.2 | -- | 0.404 | 0.497 | -- | -- | 0.351 | 14.2 | 12.69 | 1312 | -- | -- |
| 51.52 | 0.335 | 13.3 | -0.282 | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
| 38.41 | 0.29 | 13.3 | -- | 0.499 | -- | -- | -- | 0.232 | 13.6 | -- | -- | -- | -- |
| 39.9 | 0.294 | 13.2 | -- | -- | 0.581 | -- | -- | 0.33 | -- | 14.05 | 1260 | -- | -- |
| 53.62 | 0.342 | 13.3 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.48 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 3 | 27.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 4 | 27.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 21 | 27.88 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 23 | 27.88 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 62 | 28.02 | radiation | 20 | 1440 | < th | dose dependent | sin | 20 | NA |
| 80 | 28.08 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 161 | 28.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 165 | 28.22 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 177 | 28.23 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 309 | 28.35 | radiation | 20 | 1440 | < th | dose independent | sin | 21 | NA |
| 350 | 28.39 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 351 | 28.39 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 394 | 28.43 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 521 | 28.49 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 620 | 28.57 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 667 | 28.59 | radiation | 30 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 745 | 28.62 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 833 | 28.63 | radiation | 1 | 1440 | > th | dose dependent | sin | 19 | NA |
| 841 | 28.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 922 | 28.67 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 942 | 28.67 | radiation | 30 | 1440 | < th | dose dependent | rect. | 3 | 22 |
| 955 | 28.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 992 | 28.69 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |