BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0805900 Os03g0805900|Os03g0805900
(525 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0805900 Rieske [2Fe-2S] region domain containing protein 994 0.0
Os03g0805700 Rieske [2Fe-2S] region domain containing protein 627 e-180
Os03g0806350 275 6e-74
Os03g0806300 239 4e-63
Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment) 219 3e-57
Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 pr... 97 3e-20
Os03g0805800 Pheophorbide a oxygenase domain containing pro... 95 1e-19
>Os03g0805900 Rieske [2Fe-2S] region domain containing protein
Length = 525
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/525 (92%), Positives = 484/525 (92%)
Query: 1 MAPVXXXXXXXXXXXXPFRDTVTNPSTPRIPPWRRQWISPTDARRRRLSMPVSAVAAEAP 60
MAPV PFRDTVTNPSTPRIPPWRRQWISPTDARRRRLSMPVSAVAAEAP
Sbjct: 1 MAPVSLHLLSLTRLSLPFRDTVTNPSTPRIPPWRRQWISPTDARRRRLSMPVSAVAAEAP 60
Query: 61 LPRAVDEKETPAAGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWR 120
LPRAVDEKETPAAGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWR
Sbjct: 61 LPRAVDEKETPAAGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWR 120
Query: 121 VVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACV 180
VVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACV
Sbjct: 121 VVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACV 180
Query: 181 ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYIRELDDPSSVINSGVRDLLYGYRNYLQ 240
ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYIRELDDPSSVINSGVRDLLYGYRNYLQ
Sbjct: 181 ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYIRELDDPSSVINSGVRDLLYGYRNYLQ 240
Query: 241 AIHKQLDASMYVCVFEFDQEGGLPIKMNIEELNIAGFHSNPEENWGYFKFIAPVTLIGSP 300
AIHKQLDASMYVCVFEFDQEGGLPIKMNIEELNIAGFHSNPEENWGYFKFIAPVTLIGSP
Sbjct: 241 AIHKQLDASMYVCVFEFDQEGGLPIKMNIEELNIAGFHSNPEENWGYFKFIAPVTLIGSP 300
Query: 301 FRAKXXXXXXXXXXXXXXXXEVTTVFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRWWLH 360
FRAK EVTTVFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRWWLH
Sbjct: 301 FRAKPVVDQDNNNTNNKKQPEVTTVFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRWWLH 360
Query: 361 IKTNQVLDSDSSVLHIEERNYAAFGLDNWHKACYVPTSSDNLIIAFRNWFKKYCNNQVGW 420
IKTNQVLDSDSSVLHIEERNYAAFGLDNWHKACYVPTSSDNLIIAFRNWFKKYCNNQVGW
Sbjct: 361 IKTNQVLDSDSSVLHIEERNYAAFGLDNWHKACYVPTSSDNLIIAFRNWFKKYCNNQVGW 420
Query: 421 LTPMVNQLPPASTRVEVYERYWSHVMQCTSCSAALKWMRALEVALQVASVAVVGFLAAGK 480
LTPMVNQLPPASTRVEVYERYWSHVMQCTSCSAALKWMRALEVALQVASVAVVGFLAAGK
Sbjct: 421 LTPMVNQLPPASTRVEVYERYWSHVMQCTSCSAALKWMRALEVALQVASVAVVGFLAAGK 480
Query: 481 GTVVTSGVQRXXXXXXXXXXXXXSRWLAGFIEKTFYFEDYVLADK 525
GTVVTSGVQR SRWLAGFIEKTFYFEDYVLADK
Sbjct: 481 GTVVTSGVQRAAVVAAAVLCFAASRWLAGFIEKTFYFEDYVLADK 525
>Os03g0805700 Rieske [2Fe-2S] region domain containing protein
Length = 543
Score = 627 bits (1616), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/512 (64%), Positives = 363/512 (70%), Gaps = 21/512 (4%)
Query: 32 PWRRQWISPTDARRRRLSMP-VSAVAAEAPLPRAVDEKETPAAGEERFDWLDQWYPVAPV 90
P RR WI A R S+ VSA E P +E PAAGEERFDWLDQWYPVAPV
Sbjct: 35 PPRRPWIGRGVALRLPTSVSAVSAAETETETPPVAEEVRAPAAGEERFDWLDQWYPVAPV 94
Query: 91 RDLDKRKPHGKMVMGISVVVWFDGGGGEWRVVDDACPHRLAPLSEGRVDGKGCLQCAYHG 150
DLD RKPHGKMV+G+ VV WFDGGG EWRVVDDACPHRLAPLSEGRVDGKG LQCAYHG
Sbjct: 95 CDLDPRKPHGKMVLGLRVVAWFDGGG-EWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHG 153
Query: 151 WCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRSEPEYKEILQRKR 210
WCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPR+EPEY+++LQRKR
Sbjct: 154 WCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRTEPEYRDVLQRKR 213
Query: 211 PPYIRELDDPSSVINSGVRDLLYGYRNYLQAIHKQLDASMYVCVF--------------- 255
PPY +LDDPS GVRD YGYRN + + M + +
Sbjct: 214 PPYFPDLDDPSFNTVFGVRDFPYGYRNAQAILLRNGHIGMQLDILCRGSIAMQNIHLLST 273
Query: 256 -EFDQEGGLPIKMNIEELNIAGFHSNPEENWGYFKFIAPVTLIGSPFRAKXXXXXXXXXX 314
EFDQE G P+KM IEE NI GF S ENWG+F+FIAP T+ S +
Sbjct: 274 VEFDQERGGPVKMKIEEANIDGFLSIQGENWGHFRFIAPCTINRSELPLETLAHFDQEKQ 333
Query: 315 XXXXXXEVTTVFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRWWLHIKTNQVLDSDSSVL 374
+ VF CIPV+PGR RVIW ++ W DK IPRW H+ TN VLDSD +L
Sbjct: 334 QQQPQGML--VFLCIPVAPGRSRVIWVFPQSVSAWPDKFIPRWLHHMVTNTVLDSDLYLL 391
Query: 375 HIEERNYAAFGLDNWHKACYVPTSSDNLIIAFRNWFKKYCNNQVGWLTPMVNQLPPASTR 434
HIEERN+AA G+D W KACYVPT SDN+II FRNWF+KYC +QVGW TPMVNQLP T+
Sbjct: 392 HIEERNFAAVGVDKWQKACYVPTLSDNMIITFRNWFRKYCKHQVGWATPMVNQLPTTPTK 451
Query: 435 VEVYERYWSHVMQCTSCSAALKWMRALEVALQVASVAVVGFLAAGKG-TVVTSGVQRXXX 493
++ ERYWSHVMQCTSCSAALKWMRA+EVALQVASVAVVGFLAAGKG TVVTS VQR
Sbjct: 452 DQLMERYWSHVMQCTSCSAALKWMRAMEVALQVASVAVVGFLAAGKGTTVVTSAVQRAAV 511
Query: 494 XXXXXXXXXXSRWLAGFIEKTFYFEDYVLADK 525
SRWLA FIEK+FYF+DYV A K
Sbjct: 512 VAAAALCFAASRWLANFIEKSFYFQDYVHAYK 543
>Os03g0806350
Length = 248
Score = 275 bits (703), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 132/221 (59%), Positives = 161/221 (72%), Gaps = 6/221 (2%)
Query: 265 IKMNIEELNIAGFHSNPEENWGYFKFIAPVTLIGSPFRAKXXXXXXXXXXXXXXXXEVTT 324
+KM IEE +I GFHSN + +WGYFKF+AP TL G+PFR EV
Sbjct: 1 MKMRIEEASIDGFHSNLDGDWGYFKFVAPCTLYGTPFRTDLEADEVKKKKKKKP--EVRV 58
Query: 325 VFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRWWLHIKTNQVLDSDSSVLHIEERNYAAF 384
V F +PV+PGR R IWA+ Y + GW DK++PRW+ H+ +N +LDSD+ LH+E+RN
Sbjct: 59 VLFTVPVAPGRSRFIWASRYKVGGWLDKILPRWFYHMTSNTILDSDT-YLHVEDRNITTV 117
Query: 385 GLDNWHKACYVPTSSDNLIIAFRNWFKKYCNNQVGWLTP---MVNQLPPASTRVEVYERY 441
GLDNWHKACYVPTSSDNL+IA+RNWF+KYCN+Q+GW P + QLP TR ++ ERY
Sbjct: 118 GLDNWHKACYVPTSSDNLVIAYRNWFRKYCNHQIGWANPNPTVKQQLPQTPTRDQLLERY 177
Query: 442 WSHVMQCTSCSAALKWMRALEVALQVASVAVVGFLAAGKGT 482
WSHVMQCTSC AALK MRALE+ LQVA+VAVVGFLAAGK T
Sbjct: 178 WSHVMQCTSCRAALKGMRALEITLQVAAVAVVGFLAAGKET 218
>Os03g0806300
Length = 134
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 116/135 (85%), Positives = 123/135 (91%), Gaps = 3/135 (2%)
Query: 102 MVMGISVVVWFDGGGGEWRVVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQF 161
MVMG+SVV W DGGG EWRVVDDACPHRLAPLSEGRVDGKG LQCAYHGWCFDGHGSCQF
Sbjct: 1 MVMGLSVVAWLDGGG-EWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQF 59
Query: 162 IPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYIREL--DD 219
IPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRSEPEY ++L+RKRPPY+ E+ DD
Sbjct: 60 IPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRSEPEYCDVLKRKRPPYVPEIDDDD 119
Query: 220 PSSVINSGVRDLLYG 234
PS + GVRDLLYG
Sbjct: 120 PSHFMVYGVRDLLYG 134
>Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment)
Length = 529
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 237/500 (47%), Gaps = 37/500 (7%)
Query: 45 RRRLSMPVSAVAAEAPLPRAVDEKETPAAGEERFDWLDQWYPVAPVRDLDKRKPHGKMVM 104
R R++ P S V EA E T +A +E+F W D WYPV+ V DLD P ++
Sbjct: 45 RLRVAAPPS-VPGEADQAPGETEPSTSSA-DEKFVWRDHWYPVSLVEDLDPSVPTPFQLL 102
Query: 105 GISVVVWFDGGGGEWRVVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQ 164
+V+W D GEW +DD CPHRLAPLSEGR+D GCLQC+YHGW FDG G+C IPQ
Sbjct: 103 NRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQ 162
Query: 165 APALGPPVH--KNSKACVASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYIRELDDPSS 222
A GP ++ KAC +P++V +L+ +P E +++ K P +E +DP+
Sbjct: 163 AAPEGPEAKAVRSPKACAIKFPTLVSQGLLFVWP-DENGWEKATATKPPMLPKEFEDPAF 221
Query: 223 VINSGVRDLLYGYRNYLQAIH--KQLDASMYVCVFEFDQEGGLPIKMNIEELNIAGFHSN 280
+ RDL YGY ++ + ++ + + D+ LP KM E G+ +
Sbjct: 222 STVTIQRDLYYGYDTLMENVSDPSHIEFAHHKVTGRRDRARPLPFKM--ESSGAWGYSGS 279
Query: 281 PEENWGYFKFIAPVTLIGSPFRAKXXXXXXXXXXXXXXXXEVTTVFFCIPVSPGRCRVIW 340
N G + A T + + + F IP++PG+ R I
Sbjct: 280 ---NSGNPRISA--TFVAPCYALNKIEIDTKLPIFGDQKWVIWICSFNIPMAPGKTRSIV 334
Query: 341 ANGYNL-------DGWFDKMIPRWWLHIKTNQVLDSDSSVLHIEERNYAAFGLDN----- 388
+ N W+ +++PRW+ H +N V D D VL +E+ + + ++
Sbjct: 335 CSARNFFQFSMPGKAWW-QLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADIN 393
Query: 389 --WHKACYVPTSSDNLIIAFRNWFKKYCNNQVGWLTPMVNQLPPAS--TRVEVYERYWSH 444
+ K + PT +D ++AFR W +K+ N+Q W ++ P++ ++ E+ +RY H
Sbjct: 394 QQYTKITFTPTQADRFVLAFRAWLRKFGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQH 453
Query: 445 VMQCTSCSAALKWMRALEVALQVASVAVVGFLAAGKGTVVTSGVQRXXXXXXXXXXXXXS 504
++C+SC A + L+ A+VA AG + + VQ
Sbjct: 454 TLKCSSCKGAYNAFQTLQKVFMGATVAFCA--TAG----IPADVQFRLLLAAAALVSAAV 507
Query: 505 RWLAGFIEKTFYFEDYVLAD 524
+ ++K F F DYV A+
Sbjct: 508 AYAFYTLQKNFVFVDYVHAE 527
>Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 precursor
Length = 539
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 107/433 (24%), Positives = 158/433 (36%), Gaps = 72/433 (16%)
Query: 73 AGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWRVVDDACPHRLAP 132
A R+DW ++WYP+ +++ V +V++ D G R +D CPHRLA
Sbjct: 78 ASAARYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAG-VLRCHEDRCPHRLAK 136
Query: 133 LSEGR-VDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNI 191
LSEG+ VDGK L+C YHGW FDG G C IPQ P G + +N AC SY +
Sbjct: 137 LSEGQLVDGK--LECLYHGWQFDGEGKCVKIPQLPD-GAKIPRN--ACARSYEVRDSQGV 191
Query: 192 LWFYPRSEPEYKEILQRKRP---PYIRELDDPSSVINSGVRDLLYGYRNYLQAIHK--QL 246
+W + E RK P PY R P S V +L Y + L+ + +
Sbjct: 192 VWAWMSGTNPPDE---RKLPWFEPYAR----PGFTDLSTVHELPYDHSILLENLMDPAHV 244
Query: 247 DASMYVCVFEFDQEGGLPIKMNIEELNIAGFHSNPEENWG---------YFKFIAPVTLI 297
S + +E P+ + E GF WG +F AP L
Sbjct: 245 PISHDRTDWTAKREDAQPLFFEVTERTPRGFAG----YWGKQRTPHLRNLLRFEAPCVLT 300
Query: 298 GSPFRAKXXXXXXXXXXXXXXXXEVTTVFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRW 357
+ + F C P G+ ++ G K++PRW
Sbjct: 301 NT----------LEFVDKDGKEQCFSAHFLCRPAGQGKSMLLVRFGSTQTSPLVKVLPRW 350
Query: 358 WLHIKTNQVLDSDSSVLHIEERNYAAFGLDNWHKACYVPT-SSDNLIIAFRNWFKKYCNN 416
+ H +V + D L +N K Y+ SSD + +R W + +
Sbjct: 351 YFHQNACKVFEQDMGFL--SSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHG 408
Query: 417 QVGWLTPMVNQLPPASTRVEV---------------------------YERYWSHVMQCT 449
+ PP VE RY+ HV+ C
Sbjct: 409 MPYYFGHSTLSPPPVPAVVEQAPAGAVAGMSASFPAKGGVGATHAPNPTNRYFRHVVHCK 468
Query: 450 SCSAALKWMRALE 462
C ++K +L+
Sbjct: 469 GCRDSVKRYASLK 481
>Os03g0805800 Pheophorbide a oxygenase domain containing protein
Length = 98
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 53/90 (58%)
Query: 288 FKFIAPVTLIGSPFRAKXXXXXXXXXXXXXXXXEVTTVFFCIPVSPGRCRVIWANGYNLD 347
KF AP TL G PFR K E TVF C+PV+PGR R+IWA N+D
Sbjct: 1 MKFDAPCTLYGKPFRTKEPQIDQGKEKKKKKQPEAMTVFLCVPVAPGRSRLIWAFPRNVD 60
Query: 348 GWFDKMIPRWWLHIKTNQVLDSDSSVLHIE 377
W D +IPRW HI TN VLDSDS +LHIE
Sbjct: 61 AWLDNIIPRWLYHIVTNIVLDSDSYLLHIE 90
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,866,383
Number of extensions: 920647
Number of successful extensions: 2201
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2186
Number of HSP's successfully gapped: 8
Length of query: 525
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 420
Effective length of database: 11,553,331
Effective search space: 4852399020
Effective search space used: 4852399020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)