BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0796900 Os03g0796900|AK068589
(425 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0796900 BZIP protein 603 e-172
Os07g0182000 Similar to Transcriptional activator protein 186 2e-47
Os02g0266800 Transcriptional activator protein 86 6e-17
Os02g0175100 Similar to Transcriptional activator protein 84 2e-16
Os06g0662200 Eukaryotic transcription factor, DNA-binding d... 77 3e-14
>Os03g0796900 BZIP protein
Length = 425
Score = 603 bits (1554), Expect = e-172, Method: Compositional matrix adjust.
Identities = 320/425 (75%), Positives = 320/425 (75%)
Query: 1 MERVFSVEEISDPFWVPPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAMNRCPSEW 60
MERVFSVEEISDPFWVPPPPP NAMNRCPSEW
Sbjct: 1 MERVFSVEEISDPFWVPPPPPQSAAAAQQQGGGGVASGGGGGVAGGGGGGNAMNRCPSEW 60
Query: 61 YFQKFLEEAVLDSPVPNPSPRXXXXXXXXXXXXXXXDVKQPQLXXXXXXXXXXXXVVDPV 120
YFQKFLEEAVLDSPVPNPSPR DVKQPQL VVDPV
Sbjct: 61 YFQKFLEEAVLDSPVPNPSPRAEAGGIRGAGGVVPVDVKQPQLSAAAAAAATTSAVVDPV 120
Query: 121 EYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHIGAPNSIGGNATPVQN 180
EYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHIGAPNSIGGNATPVQN
Sbjct: 121 EYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHIGAPNSIGGNATPVQN 180
Query: 181 MLXXXXXXXXXQLVQNVDVLVKQPTXXXXXXXXXXXXMEGEAETTGTARPADQRLQRRKQ 240
ML QLVQNVDVLVKQPT MEGEAETTGTARPADQRLQRRKQ
Sbjct: 181 MLSGPSGGSGSQLVQNVDVLVKQPTSSSSREQSDDDDMEGEAETTGTARPADQRLQRRKQ 240
Query: 241 SNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVLKADVE 300
SN HLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVLKADVE
Sbjct: 241 SNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVLKADVE 300
Query: 301 TLRAKVKMAEDSVKRVTGMNALFPAAXXXXXXXXXXXXXXXEATSDAAVPIQDDPNNYFA 360
TLRAKVKMAEDSVKRVTGMNALFPAA EATSDAAVPIQDDPNNYFA
Sbjct: 301 TLRAKVKMAEDSVKRVTGMNALFPAASDMSSLSMPFNSSPSEATSDAAVPIQDDPNNYFA 360
Query: 361 TNNDIGGNNNYMPDIPSSAQEDEDFVNGALAAGKIGRTASLQRVASLEHLQKRMCGGPAS 420
TNNDIGGNNNYMPDIPSSAQEDEDFVNGALAAGKIGRTASLQRVASLEHLQKRMCGGPAS
Sbjct: 361 TNNDIGGNNNYMPDIPSSAQEDEDFVNGALAAGKIGRTASLQRVASLEHLQKRMCGGPAS 420
Query: 421 SGSTS 425
SGSTS
Sbjct: 421 SGSTS 425
>Os07g0182000 Similar to Transcriptional activator protein
Length = 436
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 191/392 (48%), Gaps = 41/392 (10%)
Query: 53 MNRCPSEWYFQKFLEEAVLDS--------------PVPNPSPRXXXXXXXXXXXXXXXDV 98
+ RCPS W ++FLEE LD P P P+ V
Sbjct: 41 LERCPSGWNLERFLEE--LDGVPAPAASPDGAAIYPSPMPAAAAEAAARWSRGYGDREAV 98
Query: 99 KQPQLXXXXXXXXXXXXVVDPVEYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLL 158
+ +DPVEYNAMLK+KL++DLA VAMWRASG + E P + L
Sbjct: 99 GVMPMPAAALPAAPASAAMDPVEYNAMLKRKLDEDLATVAMWRASGAIHSESPLGNKTSL 158
Query: 159 NADVSHIGAPNSIGGNATPVQNMLXXXXXXXXXQLV-QNVDVLVKQPTXXXXX--XXXXX 215
+ S + + I GN VQ L V QN D KQ T
Sbjct: 159 SIVGSILSSQKCIEGNGILVQTKLSPGPNGGSGPYVNQNTDAHAKQATSGSSREPSPSED 218
Query: 216 XXMEGEAETTGTA-RPADQRLQRRKQSNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSL 274
MEG+AE G + ++++RK+SN L +LE QVS LRVENSSL
Sbjct: 219 DDMEGDAEAMGNMILDEEDKVKKRKESNRESARRSRSRKAARLKDLEEQVSLLRVENSSL 278
Query: 275 LRRLADVNQKYNDAAVDNRVLKADVETLRAKVKMAEDSVKRVTGMNALFPAAXXXXXXXX 334
LRRLAD NQKY+ AA+DNRVL AD+E LRAKV+MAE+SVK VTG L A
Sbjct: 279 LRRLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESVKMVTGARQLHQA--------I 330
Query: 335 XXXXXXXEATSDAAVPIQ-DDPNNYFATNNDIGGNNNYMPDIPSSAQEDEDFVNGALAAG 393
SDA+VPIQ ++P NYF+ N+ G N++M + S A + D V
Sbjct: 331 PDMQSPLNVNSDASVPIQNNNPMNYFSNANN-AGVNSFMHQV-SPAFQIVDSVE------ 382
Query: 394 KIGRTASL----QRVASLEHLQKRMCGGPASS 421
KI T + Q++ASL+HLQ R CGG ASS
Sbjct: 383 KIDPTDPVQLQQQQMASLQHLQNRACGGGASS 414
>Os02g0266800 Transcriptional activator protein
Length = 298
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 52/86 (60%)
Query: 230 PADQRLQRRKQSNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAA 289
P D + RR SN HL +LE QV QLR EN+SL ++L D NQ++ A
Sbjct: 139 PLDVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDANQQFTTAV 198
Query: 290 VDNRVLKADVETLRAKVKMAEDSVKR 315
DNR+LK+DVE LR KVKMAED V R
Sbjct: 199 TDNRILKSDVEALRVKVKMAEDMVAR 224
>Os02g0175100 Similar to Transcriptional activator protein
Length = 278
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 53/86 (61%)
Query: 230 PADQRLQRRKQSNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAA 289
P D + RR SN HL +LE+QV QLR EN+SL ++L D NQ++ +
Sbjct: 120 PLDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSV 179
Query: 290 VDNRVLKADVETLRAKVKMAEDSVKR 315
DNR+LK+DVE LR KVKMAED V R
Sbjct: 180 TDNRILKSDVEALRVKVKMAEDMVAR 205
>Os06g0662200 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 295
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 256 HLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVLKADVETLRAKVKMAEDSVKR 315
L+ELE+QV QL+ ENSSL ++L + +Q++N A DNR+LK+DVE LR KVKMAED V R
Sbjct: 158 QLSELESQVEQLKGENSSLFKQLTESSQQFNTAVTDNRILKSDVEALRVKVKMAEDMVAR 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,673,025
Number of extensions: 396018
Number of successful extensions: 1007
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1003
Number of HSP's successfully gapped: 5
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)