Os02g0175100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional activator protein.
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Os02g0175100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional activator protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.97 | 0.257 | 10.8 | -0.275 | 0.698 | 0.364 | 0.169 | -2.71 | 0.0528 | 8.67 | 25.4 | 5561 | -- | -- |
| 32.79 | 0.267 | 10.7 | 0.435 | 0.728 | 0.349 | 0.22 | -- | 0.243 | 8.5 | 21.25 | 6290 | -- | -- |
| 30.03 | 0.255 | 10.8 | -0.268 | 0.705 | 0.364 | -- | -2.71 | 0.0554 | 8.68 | 25.41 | 5404 | -- | -- |
| 32.08 | 0.266 | 10.7 | 0.539 | 0.705 | 0.25 | -- | -- | 0.196 | 7.73 | 24.7 | 4324 | -- | -- |
| 57.26 | 0.352 | 10.8 | -0.185 | -- | 0.244 | -- | -2.21 | 0.0392 | -- | 25.3 | 8567 | -- | -- |
| 36.27 | 0.282 | 10.7 | 0.607 | 0.688 | -- | 0.2 | -- | 0.323 | 8.61 | -- | -- | -- | -- |
| 36.4 | 0.283 | 10.7 | 0.613 | 0.688 | -- | -- | -- | 0.323 | 8.6 | -- | -- | -- | -- |
| 56.87 | 0.353 | 10.8 | 0.497 | -- | 0.294 | -- | -- | 0.224 | -- | 23 | 4294 | -- | -- |
| 32.38 | 0.265 | 10.8 | -- | 0.69 | 0.633 | -- | -- | 0.137 | 8.64 | 16.37 | 47520 | -- | -- |
| 63.04 | 0.371 | 10.7 | 0.615 | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
| 46.3 | 0.318 | 10.7 | -- | 0.69 | -- | -- | -- | 0.255 | 8.54 | -- | -- | -- | -- |
| 59.24 | 0.358 | 10.8 | -- | -- | 0.629 | -- | -- | 0.143 | -- | 16.38 | 47520 | -- | -- |
| 73.02 | 0.399 | 10.7 | -- | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 5 | 29.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 9 | 29.77 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 22 |
| 11 | 29.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 12 | 29.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 22 | 29.96 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |
| 29 | 30.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 34 | 30.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 45 | 30.07 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 18 |
| 52 | 30.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 66 | 30.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 20 |
| 97 | 30.18 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 104 | 30.18 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 122 | 30.21 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 133 | 30.22 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 176 | 30.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 188 | 30.26 | temperature | 25 | 4320 | > th | dose dependent | sin | 3 | NA |
| 196 | 30.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 19 |
| 198 | 30.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 22 |
| 206 | 30.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 17 |
| 251 | 30.29 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 283 | 30.30 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 23 |
| 296 | 30.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 22 |
| 300 | 30.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 364 | 30.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 477 | 30.38 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 13 |
| 513 | 30.42 | temperature | 25 | 14400 | > th | dose independent | sin | 2 | NA |
| 515 | 30.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 537 | 30.44 | temperature | 25 | 14400 | < th | dose independent | sin | 2 | NA |
| 539 | 30.44 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 545 | 30.44 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 549 | 30.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 21 |
| 552 | 30.44 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 572 | 30.45 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 600 | 30.46 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 634 | 30.47 | temperature | 20 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 677 | 30.48 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 17 |
| 717 | 30.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 23 |
| 723 | 30.49 | temperature | 20 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 740 | 30.50 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 772 | 30.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 876 | 30.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 902 | 30.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 945 | 30.54 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 953 | 30.54 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 12 |