BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0175100 Os02g0175100|AB053473
(278 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0175100 Similar to Transcriptional activator protein 468 e-132
Os02g0266800 Transcriptional activator protein 387 e-108
Os06g0662200 Eukaryotic transcription factor, DNA-binding d... 123 1e-28
Os03g0796900 BZIP protein 83 2e-16
Os07g0182000 Similar to Transcriptional activator protein 72 5e-13
>Os02g0175100 Similar to Transcriptional activator protein
Length = 278
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/278 (83%), Positives = 233/278 (83%)
Query: 1 MDIEAFIHXXXXXXXXXXXHPLGIFSAADLSGFGFADSSTITGGIPNHIWPQSQNLNARH 60
MDIEAFIH HPLGIFSAADLSGFGFADSSTITGGIPNHIWPQSQNLNARH
Sbjct: 1 MDIEAFIHGGSGGGDADADHPLGIFSAADLSGFGFADSSTITGGIPNHIWPQSQNLNARH 60
Query: 61 PAVSTTIESQSSICAAASPTSATNLNMKESQXXXXXXXXXXXXXXXXXXXXXPCEQSTNP 120
PAVSTTIESQSSICAAASPTSATNLNMKESQ PCEQSTNP
Sbjct: 61 PAVSTTIESQSSICAAASPTSATNLNMKESQTLGGTSGSDSESESLLDIEGGPCEQSTNP 120
Query: 121 LDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVT 180
LDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVT
Sbjct: 121 LDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVT 180
Query: 181 DNRILKSDVEALRVKVKMAEDMVARXXXXXXXXXXXXXSPALNPRQACRVPDVLAGLDYA 240
DNRILKSDVEALRVKVKMAEDMVAR SPALNPRQACRVPDVLAGLDYA
Sbjct: 181 DNRILKSDVEALRVKVKMAEDMVARGALSCGLGHLGGLSPALNPRQACRVPDVLAGLDYA 240
Query: 241 GDDPFTAGLSQPEQLQMPGGEVVDAWGWDNHPNGGMSK 278
GDDPFTAGLSQPEQLQMPGGEVVDAWGWDNHPNGGMSK
Sbjct: 241 GDDPFTAGLSQPEQLQMPGGEVVDAWGWDNHPNGGMSK 278
>Os02g0266800 Transcriptional activator protein
Length = 298
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/261 (78%), Positives = 210/261 (80%), Gaps = 6/261 (2%)
Query: 22 LGIFSAADLSGFGFADS--STITGGIPNHIWPQSQNLNARHPAVSTTIESQSSICAAASP 79
+FSAADLS FGFADS STITG IPNHIWPQSQ+LNARHPAV TIESQSSICAAASP
Sbjct: 40 FAMFSAADLSSFGFADSVTSTITGVIPNHIWPQSQSLNARHPAV-YTIESQSSICAAASP 98
Query: 80 TSATNLNMKESQXXXXXXXXXXXXXXXXXXXXXPCEQSTNPLDVKRVRRMVSNRESARRS 139
TSAT LNMKESQ PCEQSTNPLDVKR+RRMVSNRESARRS
Sbjct: 99 TSATTLNMKESQTLGGTSGSDSDSESLLDIEGGPCEQSTNPLDVKRMRRMVSNRESARRS 158
Query: 140 RKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDVEALRVKVKMA 199
RKRKQAHLADLE+QVDQLRGENASLFKQLTDANQQFTT+VTDNRILKSDVEALRVKVKMA
Sbjct: 159 RKRKQAHLADLETQVDQLRGENASLFKQLTDANQQFTTAVTDNRILKSDVEALRVKVKMA 218
Query: 200 EDMVARXXXXXXXXXXXXXSPALNPRQ-ACRVPDVLAGLDYAGDDPFTAGLSQPEQLQMP 258
EDMVAR SPALNPRQ ACRVPDVL GLDYAGDDPFT GLS PEQ+QMP
Sbjct: 219 EDMVARGALSCGLGHLGGLSPALNPRQGACRVPDVLTGLDYAGDDPFT-GLSPPEQVQMP 277
Query: 259 -GGEVVDAWGWDNHPNGGMSK 278
GGEV DAWGWDNH NG MSK
Sbjct: 278 GGGEVGDAWGWDNHSNGAMSK 298
>Os06g0662200 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 295
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 96/123 (78%), Gaps = 1/123 (0%)
Query: 113 PCEQSTNPLDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDAN 172
P + T + KR+RRMVSNRESARRSR+RKQA L++LESQV+QL+GEN+SLFKQLT+++
Sbjct: 125 PRLRGTKSTETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENSSLFKQLTESS 184
Query: 173 QQFTTSVTDNRILKSDVEALRVKVKMAEDMVARXXXXXXXXXXXXXSPALNPRQACRVPD 232
QQF T+VTDNRILKSDVEALRVKVKMAEDMVAR +P L+ R+ C+ D
Sbjct: 185 QQFNTAVTDNRILKSDVEALRVKVKMAEDMVAR-AAMSCGLGQLGLAPLLSSRKMCQALD 243
Query: 233 VLA 235
+L+
Sbjct: 244 MLS 246
>Os03g0796900 BZIP protein
Length = 425
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 64/86 (74%)
Query: 120 PLDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSV 179
P D + RR SNRESARRSR RK AHL +LE+QV QLR EN+SL ++L D NQ++ +
Sbjct: 230 PADQRLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAA 289
Query: 180 TDNRILKSDVEALRVKVKMAEDMVAR 205
DNR+LK+DVE LR KVKMAED V R
Sbjct: 290 VDNRVLKADVETLRAKVKMAEDSVKR 315
>Os07g0182000 Similar to Transcriptional activator protein
Length = 436
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 60/80 (75%)
Query: 124 KRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNR 183
K +R SNRESARRSR RK A L DLE QV LR EN+SL ++L DANQ+++ + DNR
Sbjct: 238 KVKKRKESNRESARRSRSRKAARLKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNR 297
Query: 184 ILKSDVEALRVKVKMAEDMV 203
+L +D+EALR KV+MAE+ V
Sbjct: 298 VLMADIEALRAKVRMAEESV 317
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,666,979
Number of extensions: 268130
Number of successful extensions: 810
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 5
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)