Os02g0266800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcriptional activator protein.
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Os02g0266800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcriptional activator protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.67 | 0.26 | 12 | 0.1 | 1.61 | 0.681 | 0.346 | -3.62 | 0.158 | 7.09 | 27.13 | 5638 | -- | -- |
| 33.69 | 0.27 | 11.9 | 1.03 | 1.62 | 0.336 | 0.213 | -- | 0.278 | 7.11 | 26.05 | 6920 | -- | -- |
| 30.94 | 0.259 | 12 | 0.1 | 1.6 | 0.71 | -- | -3.82 | 0.178 | 7.09 | 27.56 | 5601 | -- | -- |
| 32.99 | 0.268 | 11.9 | 0.866 | 1.61 | 0.609 | -- | -- | 0.214 | 7.11 | 12.92 | 6807 | -- | -- |
| 164.58 | 0.598 | 12 | 0.334 | -- | 0.758 | -- | -3.58 | 0.386 | -- | 29.45 | 5685 | -- | -- |
| 37.65 | 0.288 | 11.9 | 1.15 | 1.62 | -- | 0.293 | -- | 0.353 | 7.06 | -- | -- | -- | -- |
| 37.87 | 0.288 | 11.9 | 1.16 | 1.62 | -- | -- | -- | 0.353 | 7.06 | -- | -- | -- | -- |
| 169.28 | 0.606 | 11.9 | 1.03 | -- | 0.362 | -- | -- | 0.377 | -- | 29.52 | 7098 | -- | -- |
| 39.3 | 0.292 | 12 | -- | 1.62 | 0.936 | -- | -- | -0.0556 | 7.1 | 7.229 | 47520 | -- | -- |
| 176.65 | 0.621 | 11.9 | 1.19 | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
| 73.11 | 0.4 | 11.9 | -- | 1.64 | -- | -- | -- | 0.224 | 7.01 | -- | -- | -- | -- |
| 178.45 | 0.622 | 12 | -- | -- | 0.957 | -- | -- | -0.0362 | -- | 5.802 | 47520 | -- | -- |
| 213.89 | 0.683 | 11.9 | -- | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.42 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 2 | 30.46 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 4 | 30.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 5 | 30.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 9 | 30.54 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 24 | 30.63 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 32 | 30.66 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 40 | 30.72 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 41 | 30.72 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 44 | 30.73 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 54 | 30.75 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 70 | 30.78 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 78 | 30.79 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 83 | 30.80 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 90 | 30.81 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 117 | 30.86 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 122 | 30.87 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 141 | 30.88 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 180 | 30.92 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 181 | 30.92 | wind | 5 | 43200 | > th | dose dependent | sin | 18 | NA |
| 198 | 30.94 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 313 | 31.07 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 349 | 31.10 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 376 | 31.14 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 386 | 31.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 445 | 31.20 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 449 | 31.20 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 484 | 31.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 514 | 31.26 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 519 | 31.26 | radiation | 30 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 577 | 31.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 591 | 31.31 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 641 | 31.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 642 | 31.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 661 | 31.35 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 756 | 31.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 760 | 31.41 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 818 | 31.43 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 938 | 31.48 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 946 | 31.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |