Os07g0182000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional activator protein.
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Os07g0182000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional activator protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 276.42 | 0.781 | 6.22 | -1.84 | 0.586 | 1.75 | 1.24 | -0.863 | 0.385 | 1.18 | 20.03 | 266 | 2.03 | 9.05 |
| 277.03 | 0.775 | 6.21 | -1.75 | 0.636 | 1.84 | 1.83 | -- | 0.43 | 0.132 | 20 | 237 | 2.2 | 9.02 |
| 279.2 | 0.778 | 6.22 | -1.94 | 0.721 | 1.7 | -- | -1.59 | 0.419 | 1.21 | 19.3 | 252 | 2.22 | 9.33 |
| 289.47 | 0.792 | 6.22 | -1.85 | 0.591 | 1.67 | -- | -- | 0.388 | 2.08 | 20 | 243 | 2.46 | 8.62 |
| 295.45 | 0.801 | 6.18 | -1.73 | -- | 1.54 | -- | -1.14 | 0.539 | -- | 18.56 | 215 | 1.82 | 9.43 |
| 323.65 | 0.843 | 6.13 | -1.59 | 1.6 | -- | -1.39 | -- | 0.539 | 7.74 | -- | -- | -- | -- |
| 329.08 | 0.85 | 6.13 | -1.63 | 1.6 | -- | -- | -- | 0.54 | 7.63 | -- | -- | -- | -- |
| 299.41 | 0.806 | 6.19 | -1.75 | -- | 1.58 | -- | -- | 0.47 | -- | 20.2 | 255 | 1.52 | 9.23 |
| 373.07 | 0.9 | 6.18 | -- | 0.489 | 1.55 | -- | -- | 0.617 | 2.43 | 20.3 | 250 | 2.4 | 8.63 |
| 467.55 | 1.01 | 6.17 | -1.61 | -- | -- | -- | -- | 0.564 | -- | -- | -- | -- | -- |
| 399.22 | 0.935 | 6.09 | -- | 1.59 | -- | -- | -- | 0.722 | 7.7 | -- | -- | -- | -- |
| 381.84 | 0.91 | 6.18 | -- | -- | 1.48 | -- | -- | 0.61 | -- | 20 | 213 | 2.21 | 8.65 |
| 535.86 | 1.08 | 6.13 | -- | -- | -- | -- | -- | 0.743 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 276.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 9 |
| 2 | 279.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 12 | 284.78 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 15 | 285.82 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 16 | 285.87 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 22 | 286.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 9 |
| 34 | 287.52 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 48 | 288.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 52 | 288.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 54 | 288.83 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 59 | 289.02 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 74 | 289.63 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 17 |
| 80 | 289.90 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 94 | 290.36 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 102 | 290.57 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 104 | 290.60 | humidity | 90.0 | 720 | < th | dose independent | rect. | 8 | 6 |
| 105 | 290.74 | temperature | 25.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 115 | 290.86 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 133 | 291.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 137 | 291.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 144 | 291.16 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 157 | 291.51 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 162 | 291.55 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 169 | 291.66 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 177 | 291.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 178 | 291.73 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 188 | 291.86 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 216 | 292.06 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 230 | 292.21 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 232 | 292.23 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 234 | 292.24 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 272 | 292.82 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 24 | 3 |
| 273 | 292.82 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 24 | 3 |
| 277 | 292.85 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 302 | 293.07 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 341 | 293.30 | radiation | 1.0 | 720 | < th | dose independent | rect. | 21 | 17 |
| 388 | 293.73 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 394 | 293.78 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 396 | 293.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 397 | 293.84 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 418 | 293.99 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 437 | 294.09 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 22 |
| 453 | 294.19 | humidity | 80.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 455 | 294.20 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 481 | 294.42 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 488 | 294.45 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 507 | 294.53 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 22 |
| 528 | 294.60 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 9 |
| 548 | 294.69 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 592 | 294.86 | temperature | 15.0 | 720 | > th | dose independent | rect. | 8 | 7 |
| 606 | 294.93 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 611 | 294.95 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 617 | 294.99 | humidity | 80.0 | 720 | < th | dose independent | rect. | 3 | 11 |
| 646 | 295.07 | wind | 7.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 650 | 295.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 655 | 295.10 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 662 | 295.12 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 17 |
| 664 | 295.12 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 738 | 295.43 | radiation | 40.0 | 90 | < th | dose independent | rect. | 11 | 16 |
| 747 | 295.45 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 15 |
| 806 | 295.65 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 816 | 295.70 | humidity | 90.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 836 | 295.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 856 | 295.83 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 918 | 296.12 | humidity | 80.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 923 | 296.14 | temperature | 15.0 | 720 | > th | dose independent | rect. | 23 | 7 |
| 927 | 296.15 | radiation | 10.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 933 | 296.18 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 959 | 296.23 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 22 | 15 |
| 965 | 296.25 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 988 | 296.31 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |