BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0182000 Os07g0182000|AB053472
(436 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54620.1 | chr3:20218085-20220341 REVERSE LENGTH=404 92 6e-19
AT5G28770.2 | chr5:10796648-10798147 REVERSE LENGTH=315 82 5e-16
AT4G02640.2 | chr4:1154031-1156085 FORWARD LENGTH=418 79 6e-15
AT5G24800.1 | chr5:8515259-8516541 FORWARD LENGTH=278 62 6e-10
>AT3G54620.1 | chr3:20218085-20220341 REVERSE LENGTH=404
Length = 403
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 261 LKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESVKMV 320
+ + + QV LR E+S+L+ RL+D N KY AAA+DNR+L ADIE LR KV+MAEE+VK V
Sbjct: 254 MNEFDTQVGQLRAEHSTLINRLSDMNHKYDAAAVDNRILRADIETLRTKVKMAEETVKRV 313
Query: 321 TGARQLHQAIPDMQSPLNVNSDASVPIQNNNPMNYFSNANNAGVNS 366
TG LH + P+M P + AS I N+ N+ N+ N+
Sbjct: 314 TGVNPLHWSRPNMGIPFSNTPSASSSIPPNS--NHILKPANSSTNT 357
>AT5G28770.2 | chr5:10796648-10798147 REVERSE LENGTH=315
Length = 314
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 60/84 (71%)
Query: 261 LKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESVKMV 320
L +LE QVS LRVENS L++ L D Q ++ A+++NRVL A+IE LRAKV+MAEE+VK +
Sbjct: 176 LSELETQVSQLRVENSKLMKGLTDVTQTFNDASVENRVLKANIETLRAKVKMAEETVKRL 235
Query: 321 TGARQLHQAIPDMQSPLNVNSDAS 344
TG + +P + S +++ S+ S
Sbjct: 236 TGFNPMFHNMPQIVSTVSLPSETS 259
>AT4G02640.2 | chr4:1154031-1156085 FORWARD LENGTH=418
Length = 417
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 263 DLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESVKMVTG 322
DLE QV+ L+ E+SSLL++L++ N KY AA+ NR+L ADIE LRAKV+MAEE+VK VTG
Sbjct: 248 DLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETVKRVTG 307
>AT5G24800.1 | chr5:8515259-8516541 FORWARD LENGTH=278
Length = 277
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 261 LKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESVKMV 320
L DLE QV L+ +NS+L ++L DA Q++ +A +NRVL +D+E LR KV++AE+ V
Sbjct: 145 LVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTNNRVLKSDVETLRVKVKLAEDLVARG 204
Query: 321 TGARQLHQAIPDMQSP 336
+ L+Q + SP
Sbjct: 205 SLTSSLNQLLQTHLSP 220
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,790,213
Number of extensions: 225735
Number of successful extensions: 513
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 4
Length of query: 436
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 334
Effective length of database: 8,310,137
Effective search space: 2775585758
Effective search space used: 2775585758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)