BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0182000 Os07g0182000|AB053472
(436 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0182000 Similar to Transcriptional activator protein 605 e-173
Os03g0796900 BZIP protein 159 5e-39
Os02g0266800 Transcriptional activator protein 72 6e-13
Os02g0175100 Similar to Transcriptional activator protein 71 1e-12
>Os07g0182000 Similar to Transcriptional activator protein
Length = 436
Score = 605 bits (1561), Expect = e-173, Method: Compositional matrix adjust.
Identities = 315/436 (72%), Positives = 315/436 (72%)
Query: 1 MEHVFAVDEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERCPSGWNLERFLEELDGV 60
MEHVFAVDEI ERCPSGWNLERFLEELDGV
Sbjct: 1 MEHVFAVDEIPDPLWAPPPPVQPAAAAGVDDVGAVSGGGLLERCPSGWNLERFLEELDGV 60
Query: 61 PAPAASPDGAAIYPSPMPXXXXXXXXRWSRGYGDREXXXXXXXXXXXXXXXXXXXXXXXX 120
PAPAASPDGAAIYPSPMP RWSRGYGDRE
Sbjct: 61 PAPAASPDGAAIYPSPMPAAAAEAAARWSRGYGDREAVGVMPMPAAALPAAPASAAMDPV 120
Query: 121 EYNAMLKRKLDEDLATVAMWRASGAIHSESPLGNKTSLSIVGSILSSQKCIEGNGILVQT 180
EYNAMLKRKLDEDLATVAMWRASGAIHSESPLGNKTSLSIVGSILSSQKCIEGNGILVQT
Sbjct: 121 EYNAMLKRKLDEDLATVAMWRASGAIHSESPLGNKTSLSIVGSILSSQKCIEGNGILVQT 180
Query: 181 KLSPGPNGGSGPYVNQNTDAHAKQATXXXXXXXXXXXXXXXXXXXXXXXNMILDEEDKVX 240
KLSPGPNGGSGPYVNQNTDAHAKQAT NMILDEEDKV
Sbjct: 181 KLSPGPNGGSGPYVNQNTDAHAKQATSGSSREPSPSEDDDMEGDAEAMGNMILDEEDKVK 240
Query: 241 XXXXXXXXXXXXXXXXXXXXLKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLM 300
LKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLM
Sbjct: 241 KRKESNRESARRSRSRKAARLKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLM 300
Query: 301 ADIEALRAKVRMAEESVKMVTGARQLHQAIPDMQSPLNVNSDASVPIQNNNPMNYFSNAN 360
ADIEALRAKVRMAEESVKMVTGARQLHQAIPDMQSPLNVNSDASVPIQNNNPMNYFSNAN
Sbjct: 301 ADIEALRAKVRMAEESVKMVTGARQLHQAIPDMQSPLNVNSDASVPIQNNNPMNYFSNAN 360
Query: 361 NAGVNSFMHQVSPAFQIVDSVEKIDPTDPVXXXXXXXXXXXXXXNRACGGGASSNEYTAW 420
NAGVNSFMHQVSPAFQIVDSVEKIDPTDPV NRACGGGASSNEYTAW
Sbjct: 361 NAGVNSFMHQVSPAFQIVDSVEKIDPTDPVQLQQQQMASLQHLQNRACGGGASSNEYTAW 420
Query: 421 GSSLMDANELVNMELQ 436
GSSLMDANELVNMELQ
Sbjct: 421 GSSLMDANELVNMELQ 436
>Os03g0796900 BZIP protein
Length = 425
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 155/345 (44%), Gaps = 30/345 (8%)
Query: 43 RCPSGWNLERFLEELDGVPAPAASPDGAAIYPSPMPXXXXXXXXRWSRGYGD--REXXXX 100
RCPS W ++FLEE A+ SP+P RG G
Sbjct: 55 RCPSEWYFQKFLEE--------------AVLDSPVPNPSPRAEAGGIRGAGGVVPVDVKQ 100
Query: 101 XXXXXXXXXXXXXXXXXXXXEYNAMLKRKLDEDLATVAMWRASGAIHSESPLGNKTSLSI 160
EYNAMLK+KL++DLA VAMWRASG + E P + L+
Sbjct: 101 PQLSAAAAAAATTSAVVDPVEYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNA 160
Query: 161 VGSILSSQKCIEGNGILVQTKLSPGPNGGSGPYVNQNTDAHAKQATXXXXXXXXXXXXXX 220
S + + I GN VQ LS G V QN D KQ T
Sbjct: 161 DVSHIGAPNSIGGNATPVQNMLSGPSGGSGSQLV-QNVDVLVKQPTSSSSREQSDDDDME 219
Query: 221 XXXXXXXXXNMILDEEDKVXXXXXXXXXXXXXXXXXXXXXLKDLEEQVSLLRVENSSLLR 280
+ ++ L +LE QVS LRVENSSLLR
Sbjct: 220 GEAETTGTAR---PADQRLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLR 276
Query: 281 RLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESVKMVTGARQLHQAIPDM------- 333
RLAD NQKY+ AA+DNRVL AD+E LRAKV+MAE+SVK VTG L A DM
Sbjct: 277 RLADVNQKYNDAAVDNRVLKADVETLRAKVKMAEDSVKRVTGMNALFPAASDMSSLSMPF 336
Query: 334 -QSPLNVNSDASVPIQNNNPMNYFSNANN-AGVNSFMHQVSPAFQ 376
SP SDA+VPIQ ++P NYF+ N+ G N++M + + Q
Sbjct: 337 NSSPSEATSDAAVPIQ-DDPNNYFATNNDIGGNNNYMPDIPSSAQ 380
>Os02g0266800 Transcriptional activator protein
Length = 298
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 261 LKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESV 317
L DLE QV LR EN+SL ++L DANQ+++ A DNR+L +D+EALR KV+MAE+ V
Sbjct: 166 LADLETQVDQLRGENASLFKQLTDANQQFTTAVTDNRILKSDVEALRVKVKMAEDMV 222
>Os02g0175100 Similar to Transcriptional activator protein
Length = 278
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 261 LKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLMADIEALRAKVRMAEESV 317
L DLE QV LR EN+SL ++L DANQ+++ + DNR+L +D+EALR KV+MAE+ V
Sbjct: 147 LADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDVEALRVKVKMAEDMV 203
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,111,467
Number of extensions: 376620
Number of successful extensions: 796
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 5
Length of query: 436
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 332
Effective length of database: 11,605,545
Effective search space: 3853040940
Effective search space used: 3853040940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)