BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0796000 Os03g0796000|AK064912
(190 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0796000 Similar to Ripening-associated protein (Fragment) 396 e-111
Os03g0744600 Similar to Ripening-associated protein (Fragment) 271 2e-73
AK060366 271 2e-73
Os11g0147800 Similar to Wali7 protein (Fragment) 172 1e-43
Os12g0145100 Similar to Wali7 protein (Fragment) 166 8e-42
Os04g0679400 Similar to Ripening-associated protein (Fragment) 136 9e-33
>Os03g0796000 Similar to Ripening-associated protein (Fragment)
Length = 190
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MTIPRRRLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYP 60
MTIPRRRLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYP
Sbjct: 1 MTIPRRRLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYP 60
Query: 61 ADQVVRDINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACG 120
ADQVVRDINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACG
Sbjct: 61 ADQVVRDINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACG 120
Query: 121 KSSAPFPKGFFFTTSGGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDAKAKKDSSIPRV 180
KSSAPFPKGFFFTTSGGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDAKAKKDSSIPRV
Sbjct: 121 KSSAPFPKGFFFTTSGGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDAKAKKDSSIPRV 180
Query: 181 GSAADWSSQY 190
GSAADWSSQY
Sbjct: 181 GSAADWSSQY 190
>Os03g0744600 Similar to Ripening-associated protein (Fragment)
Length = 251
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 122/184 (66%), Positives = 155/184 (84%), Gaps = 1/184 (0%)
Query: 7 RLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYPADQVVR 66
RLF A ++IFCLFQG IENIA LKQ YGL +K +TE+ I+IEAYRTLRDRGP PA QVVR
Sbjct: 69 RLFGAVNDIFCLFQGHIENIASLKQHYGL-SKTATEVTILIEAYRTLRDRGPLPASQVVR 127
Query: 67 DINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACGKSSAPF 126
D++GKF F+LYD + S F+A DADGS+PF+WGVD ++ LV SD+ +++ +CG S APF
Sbjct: 128 DLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASCGNSFAPF 187
Query: 127 PKGFFFTTSGGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDAKAKKDSSIPRVGSAADW 186
PKG F+TTSGGLQS+EHP+NE+KPVPR+DS+G++CG+ Y VD++AKKDS IPRVGSAADW
Sbjct: 188 PKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPRVGSAADW 247
Query: 187 SSQY 190
S+ +
Sbjct: 248 SNHF 251
>AK060366
Length = 251
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 122/184 (66%), Positives = 155/184 (84%), Gaps = 1/184 (0%)
Query: 7 RLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYPADQVVR 66
RLF A ++IFCLFQG IENIA LKQ YGL +K +TE+ I+IEAYRTLRDRGP PA QVVR
Sbjct: 69 RLFGAVNDIFCLFQGHIENIASLKQHYGL-SKTATEVTILIEAYRTLRDRGPLPASQVVR 127
Query: 67 DINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACGKSSAPF 126
D++GKF F+LYD + S F+A DADGS+PF+WGVD ++ LV SD+ +++ +CG S APF
Sbjct: 128 DLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASCGNSFAPF 187
Query: 127 PKGFFFTTSGGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDAKAKKDSSIPRVGSAADW 186
PKG F+TTSGGLQS+EHP+NE+KPVPR+DS+G++CG+ Y VD++AKKDS IPRVGSAADW
Sbjct: 188 PKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPRVGSAADW 247
Query: 187 SSQY 190
S+ +
Sbjct: 248 SNHF 251
>Os11g0147800 Similar to Wali7 protein (Fragment)
Length = 237
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 122/169 (72%), Gaps = 4/169 (2%)
Query: 2 TIPRRRLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYPA 61
++ R R FA+ D+IFCLF+G ++N+ L QQYGL +KG+ E+ ++IEAY+TLRDR PYPA
Sbjct: 63 SLLRPRSFASKDDIFCLFEGVLDNLGRLSQQYGL-SKGANEVLLVIEAYKTLRDRAPYPA 121
Query: 62 DQVVRDINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACGK 121
++ + G +AFVL+D S +S+ +A+D +G VP +WG+ D + S+D +++ +CGK
Sbjct: 122 SFMLSQLTGSYAFVLFDKSTSSLLVASDPEGKVPLFWGITADGSVAFSNDIDLLKGSCGK 181
Query: 122 SSAPFPKGFFFTTS-GGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDA 169
S APFP+G F++ + GGL+ YE+P N+V VP ++ E+CG T+ V++
Sbjct: 182 SLAPFPQGCFYSNALGGLKCYENPKNKVTAVPA--NEEEICGATFKVES 228
>Os12g0145100 Similar to Wali7 protein (Fragment)
Length = 238
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 117/167 (70%), Gaps = 6/167 (3%)
Query: 5 RRRLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYPADQV 64
R R FAA D+IFCLF+G ++N+ L QQYGL +KG+ E+ ++IEAY+TLRDR PYPA +
Sbjct: 66 RPRSFAAKDDIFCLFEGVLDNLGNLNQQYGL-SKGANEVLLVIEAYKTLRDRAPYPASFM 124
Query: 65 VRDINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACGKSSA 124
+ + G +AFVL+D S +++ +A+D +G V YWG+ D + SD+ +++ +CGKS A
Sbjct: 125 LSQLAGSYAFVLFDKSTSTLLVASDPEGKVSLYWGITADGSVAFSDNIDLLKGSCGKSLA 184
Query: 125 PFPKGFFFTTS---GGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVD 168
PFP+G F++ + GGL+ YE+P ++V VP + E+CG T+ V+
Sbjct: 185 PFPQGCFYSNALGVGGLKCYENPKHKVTAVPAKEE--EICGATFKVE 229
>Os04g0679400 Similar to Ripening-associated protein (Fragment)
Length = 180
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 64 VVRDINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACGKSS 123
VV+D++G FAFV++D + +VF A DG VP YWG+ D +V+ D+ EIV CGKS
Sbjct: 50 VVKDLSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSY 109
Query: 124 APFPKGFFFTTSGGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDAKAKKDSSIPRVGSA 183
APFP G F + GGL+S+EHPMN +K +PR+DS+G +CG T+ VD K + S+PRVGSA
Sbjct: 110 APFPVGCMFHSEGGLKSFEHPMNRLKAMPRVDSEGVMCGATFKVDTFTKIN-SMPRVGSA 168
Query: 184 AD 185
+
Sbjct: 169 TN 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,865,491
Number of extensions: 288825
Number of successful extensions: 722
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 6
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)