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Os03g0796000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ripening-associated protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.85 (0.0185) R2 : 0.548
β1 : 0.855 (0.0679) R2dD : 0.164 R2D : 0.169
β2 : 0.888 (0.0456) R2dC : 0.376 R2C : 0.388
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0477 (0.0396) R2dN8 : 0.00193 R2N8 : -0.00331
σ : 0.348
deviance : 55.37
__
_____
C
peak time of C : 2.67
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.83 0.318 9.85 0.832 0.634 0.548 -0.191 -1.03 0.0514 4.06 45.25 10 -- --
47.94 0.322 9.86 0.854 0.668 0.533 -0.793 -- 0.0466 3.31 101.7 8 -- --
45.91 0.316 9.85 0.829 0.63 0.547 -- -1.09 0.0531 4.14 44.05 10 -- --
49.74 0.328 9.85 0.857 0.642 0.645 -- -- 0.0467 3.99 77.87 8 -- --
51.39 0.334 9.86 0.884 -- 0.816 -- -1.36 0.0783 -- 12.98 291 -- --
52.16 0.339 9.86 0.83 0.886 -- -0.959 -- 0.0425 2.5 -- -- -- --
55.37 0.348 9.85 0.855 0.888 -- -- -- 0.0477 2.67 -- -- -- --
54.84 0.345 9.85 0.88 -- 0.793 -- -- 0.08 -- 10.04 331 -- --
69.25 0.388 9.87 -- 0.663 0.638 -- -- -0.0493 3.96 92.78 7 -- --
101.34 0.47 9.85 0.893 -- -- -- -- 0.0701 -- -- -- -- --
74.65 0.404 9.87 -- 0.905 -- -- -- -0.0476 2.68 -- -- -- --
74.53 0.402 9.87 -- -- 0.809 -- -- -0.0129 -- 10.02 337 -- --
122.38 0.516 9.87 -- -- -- -- -- -0.0289 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.11 temperature 15.0 270 > th dose independent rect. 8 7
3 35.22 radiation 1.0 270 > th dose independent rect. 7 8
6 35.89 temperature 15.0 270 > th dose independent rect. 15 17
9 36.15 wind 1.0 270 > th dose independent rect. 8 7
10 36.31 humidity 50.0 270 > th dose independent rect. 8 7
11 36.32 precipitation 0.1 270 < th dose independent rect. 8 7
12 36.32 precipitation 0.1 270 < th dose dependent rect. 8 7
13 36.34 wind 9.0 270 < th dose independent rect. 8 7
17 36.37 atmosphere 1015.0 270 < th dose independent rect. 8 7
19 36.37 precipitation 0.1 270 < th dose independent rect. 15 17
20 36.37 precipitation 0.1 270 < th dose dependent rect. 15 17
21 36.38 radiation 40.0 270 < th dose independent rect. 15 16
26 36.41 atmosphere 995.0 270 > th dose independent rect. 8 7
30 36.46 wind 9.0 270 < th dose independent rect. 15 17
40 36.76 radiation 40.0 270 < th dose dependent rect. 3 6
44 36.92 wind 5.0 270 < th dose independent rect. 3 5
45 36.92 temperature 10.0 270 > th dose dependent rect. 7 7
47 36.94 radiation 20.0 270 < th dose independent rect. 3 5
49 36.99 temperature 30.0 270 < th dose independent rect. 2 7
54 37.10 atmosphere 995.0 270 > th dose independent rect. 15 17
63 37.22 humidity 50.0 270 > th dose dependent rect. 19 8
80 37.34 precipitation 0.1 270 < th dose independent rect. 3 5
81 37.34 precipitation 0.1 270 < th dose dependent rect. 3 5
83 37.35 temperature 10.0 270 > th dose independent rect. 3 5
85 37.35 temperature 30.0 270 < th dose independent rect. 3 5
86 37.35 humidity 50.0 270 > th dose independent rect. 3 5
88 37.35 atmosphere 995.0 270 > th dose independent rect. 3 5
89 37.35 atmosphere 1015.0 270 < th dose independent rect. 3 5
90 37.35 temperature 10.0 270 > th dose independent rect. 8 19
91 37.36 wind 9.0 270 < th dose independent rect. 8 19
94 37.39 radiation 40.0 270 < th dose independent rect. 3 5
96 37.40 humidity 90.0 270 < th dose independent rect. 8 7
97 37.40 precipitation 0.1 270 < th dose independent rect. 2 7
99 37.40 precipitation 0.1 270 < th dose dependent rect. 2 7
101 37.41 temperature 10.0 270 > th dose independent rect. 2 7
103 37.41 humidity 50.0 270 > th dose independent rect. 2 7
104 37.41 atmosphere 995.0 270 > th dose independent rect. 2 7
105 37.41 atmosphere 1015.0 270 < th dose independent rect. 2 7
106 37.41 temperature 10.0 270 > th dose independent rect. 9 17
109 37.48 wind 9.0 270 < th dose independent rect. 9 17
129 37.62 temperature 15.0 270 > th dose independent rect. 13 9
145 37.78 precipitation 0.1 270 < th dose independent rect. 8 19
146 37.78 precipitation 0.1 270 < th dose dependent rect. 8 19
152 37.83 precipitation 0.1 270 < th dose independent rect. 9 17
153 37.83 wind 1.0 270 > th dose independent rect. 8 19
154 37.83 precipitation 0.1 270 < th dose dependent rect. 9 17
169 37.93 wind 1.0 270 > th dose independent rect. 9 17
174 37.95 atmosphere 995.0 270 > th dose dependent rect. 2 6
178 37.97 wind 1.0 270 > th dose independent rect. 2 6
184 37.97 wind 1.0 270 > th dose independent rect. 15 16
188 37.99 wind 9.0 270 < th dose dependent rect. 3 5
208 38.07 humidity 50.0 270 > th dose dependent rect. 3 5
221 38.21 wind 9.0 270 < th dose independent rect. 22 15
227 38.24 radiation 40.0 270 < th dose dependent rect. 15 17
232 38.28 humidity 50.0 270 > th dose independent rect. 22 15
235 38.29 precipitation 0.1 270 < th dose independent rect. 13 9
236 38.29 precipitation 0.1 270 < th dose dependent rect. 13 9
244 38.33 temperature 10.0 270 > th dose independent rect. 22 15
246 38.33 atmosphere 995.0 270 > th dose independent rect. 22 15
257 38.35 precipitation 0.1 270 < th dose independent rect. 22 15
259 38.35 precipitation 0.1 270 < th dose dependent rect. 22 15
264 38.38 precipitation 0.1 270 < th dose independent rect. 3 16
265 38.38 precipitation 0.1 270 < th dose dependent rect. 3 16
277 38.46 atmosphere 995.0 270 > th dose independent rect. 8 19
298 38.57 wind 9.0 270 < th dose independent rect. 13 9
304 38.60 humidity 60.0 270 > th dose independent rect. 19 8
312 38.64 temperature 10.0 270 > th dose independent rect. 19 8
313 38.64 temperature 30.0 270 < th dose independent rect. 19 8
315 38.64 atmosphere 995.0 270 > th dose independent rect. 19 8
316 38.64 radiation 1.0 270 < th dose independent rect. 19 8
321 38.64 temperature 10.0 270 > th dose independent rect. 3 16
322 38.64 atmosphere 1015.0 270 < th dose independent rect. 3 16
324 38.64 radiation 1.0 270 < th dose dependent rect. 19 8
345 38.70 wind 9.0 270 < th dose independent rect. 19 8
347 38.71 wind 1.0 270 > th dose independent rect. 13 9
370 38.81 precipitation 0.1 270 < th dose independent rect. 19 8
371 38.81 precipitation 0.1 270 < th dose dependent rect. 19 8
378 38.86 humidity 50.0 270 > th dose independent rect. 15 17
413 38.95 atmosphere 1015.0 270 < th dose independent rect. 13 8
445 39.08 wind 9.0 270 < th dose independent rect. 3 16
446 39.08 atmosphere 1015.0 270 < th dose independent rect. 15 17
491 39.31 atmosphere 995.0 270 > th dose independent rect. 13 8
498 39.35 temperature 10.0 270 > th dose dependent rect. 3 4
500 39.36 radiation 40.0 10 < th dose dependent rect. 6 16
524 39.47 humidity 50.0 270 > th dose independent rect. 8 19
535 39.50 temperature 10.0 10 > th dose dependent rect. 9 7
558 39.52 atmosphere 1015.0 270 < th dose independent rect. 22 15
576 39.58 radiation 40.0 90 < th dose independent rect. 5 16
592 39.61 atmosphere 995.0 270 > th dose independent rect. 3 16
641 39.76 radiation 1.0 90 < th dose dependent rect. 21 9
694 39.86 atmosphere 1015.0 270 < th dose independent rect. 8 18
707 39.90 radiation 1.0 90 < th dose independent rect. 21 9
737 39.96 radiation 40.0 270 < th dose independent rect. 14 7
800 40.08 radiation 1.0 90 < th dose dependent rect. 21 13
832 40.14 temperature 15.0 10 > th dose independent rect. 16 17
845 40.19 radiation 40.0 270 < th dose independent rect. 3 16
878 40.26 temperature 30.0 270 < th dose dependent rect. 3 5
880 40.27 radiation 40.0 10 < th dose independent rect. 16 18
900 40.35 wind 9.0 270 < th dose dependent rect. 8 7
923 40.43 wind 1.0 10 > th dose independent rect. 9 7
924 40.43 wind 7.0 10 < th dose independent rect. 16 18
927 40.44 radiation 40.0 270 < th dose dependent rect. 3 15
978 40.53 precipitation 0.1 10 < th dose independent rect. 16 17
986 40.53 precipitation 0.1 10 < th dose dependent rect. 16 17
992 40.55 radiation 1.0 90 < th dose independent rect. 21 13
994 40.56 wind 1.0 270 > th dose independent rect. 20 7
997 40.57 radiation 1.0 90 > th dose independent sin 10 NA