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Os04g0679400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ripening-associated protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0828) R2 : 0.721
β1 : 2.39 (0.335) R2dD : 0.0439 R2D : -0.0526
β2 : 5.94 (0.203) R2dC : 0.528 R2C : 0.489
β3 : -4.86 (0.344) R2dE : 0.146 R2E : 0.0508
β4 : 4.84 (0.901) R2dD*C : 0.0179 R2D*C : -0.00373
β5 : 4.52 (1.35) R2dD*E : 0.00968 R2D*E : -0.0403
γ1 : 2.28 (0.18) R2dN8 : 0.151 R2N8 : 0.0234
σ : 1.48
deviance : 993.35
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C
peak time of C : 19.3
E
wheather : humidity
threshold : 79.8
memory length : 1449
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.04
open length of G : 7.98

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
993.35 1.48 10.6 2.39 5.94 -4.86 4.84 4.52 2.28 19.3 79.8 1449 6.04 7.98
1012.91 1.48 10.7 1.85 6 -4.44 4.53 -- 2.16 19.4 79.26 1430 6.02 8.52
1051.33 1.51 10.6 2.32 6.06 -4.66 -- 4.38 2.33 19.5 79.91 1427 6.1 7.93
1060 1.52 10.7 1.78 6.16 -4.24 -- -- 2.19 19.7 79 1385 5.97 8.65
2865.49 2.49 10.4 2.57 -- -5.34 -- 4.99 2.31 -- 80 1518 6.05 8.37
1431.16 1.77 10.8 0.99 5.99 -- 4.51 -- 1.56 19.3 -- -- -- --
1483.1 1.8 10.8 0.884 5.99 -- -- -- 1.57 19.4 -- -- -- --
2867.76 2.49 10.5 1.71 -- -6.76 -- -- 1.91 -- 79.47 1533 4.24 9.33
1138.28 1.57 10.7 -- 6.13 -3.85 -- -- 1.95 19.7 79.24 1385 6.03 8.66
3392.53 2.72 10.6 0.788 -- -- -- -- 1.47 -- -- -- -- --
1503.7 1.81 10.8 -- 5.98 -- -- -- 1.47 19.4 -- -- -- --
2904.44 2.52 10.7 -- -- -2.26 -- -- 1.37 -- 83.05 1546 5.58 8.63
3408.91 2.73 10.7 -- -- -- -- -- 1.38 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 994.45 humidity 80 1440 < th dose independent rect. 6 8
5 1003.25 humidity 70 1440 > th dose independent rect. 18 20
12 1011.42 humidity 80 1440 > th dose independent rect. 6 8
30 1021.77 humidity 80 1440 < th dose dependent rect. 20 18
32 1022.41 humidity 80 1440 < th dose dependent sin 7 NA
40 1024.60 humidity 70 1440 < th dose independent rect. 18 20
41 1024.90 humidity 80 1440 < th dose independent sin 4 NA
53 1027.20 humidity 90 1440 < th dose dependent rect. 3 11
59 1028.64 humidity 80 1440 < th dose dependent rect. 23 15
72 1030.09 humidity 50 720 > th dose dependent rect. 17 8
82 1031.78 humidity 90 720 < th dose dependent rect. 20 1
84 1031.96 humidity 90 720 < th dose dependent rect. 18 5
98 1033.51 humidity 80 1440 > th dose independent sin 3 NA
106 1034.31 humidity 60 1440 > th dose dependent rect. 9 5
110 1034.97 humidity 70 1440 > th dose independent sin 9 NA
165 1040.68 humidity 60 1440 > th dose dependent rect. 11 2
201 1043.34 radiation 10 1440 > th dose independent rect. 15 22
271 1049.97 humidity 70 1440 > th dose independent rect. 9 5
275 1050.27 temperature 25 720 > th dose dependent rect. 20 1
284 1050.72 humidity 70 1440 < th dose independent sin 9 NA
332 1053.07 humidity 50 1440 > th dose dependent sin 1 NA
395 1055.99 humidity 80 1440 < th dose dependent rect. 13 23
422 1057.19 radiation 10 1440 > th dose independent sin 4 NA
425 1057.35 humidity 80 1440 < th dose dependent rect. 23 23
432 1057.69 humidity 80 1440 < th dose dependent no NA NA
434 1057.70 humidity 80 1440 < th dose dependent rect. 5 23
585 1061.54 radiation 10 1440 > th dose independent rect. 11 23
604 1062.09 radiation 10 1440 > th dose independent rect. 6 12
621 1062.21 radiation 10 1440 > th dose independent rect. 6 8
626 1062.34 radiation 10 1440 > th dose independent no NA NA
753 1063.70 humidity 70 1440 > th dose independent rect. 9 23
794 1064.85 humidity 80 1440 < th dose dependent rect. 11 23
802 1065.08 humidity 70 1440 > th dose independent rect. 24 21
805 1065.11 humidity 70 1440 > th dose independent rect. 2 19
808 1065.18 humidity 70 1440 > th dose independent rect. 6 15
812 1065.19 humidity 70 1440 > th dose independent rect. 6 23
816 1065.23 humidity 70 1440 > th dose independent rect. 4 17
819 1065.23 humidity 70 1440 > th dose independent rect. 6 21
824 1065.24 humidity 70 1440 > th dose independent rect. 2 23
831 1065.27 humidity 70 1440 > th dose independent rect. 4 23
832 1065.28 humidity 70 1440 > th dose independent no NA NA
837 1065.31 humidity 70 1440 > th dose independent rect. 6 19
891 1065.83 humidity 70 1440 > th dose independent rect. 13 23
946 1067.37 humidity 70 1440 > th dose independent rect. 9 12
947 1067.41 humidity 70 1440 > th dose independent rect. 9 20
949 1067.45 humidity 70 1440 > th dose independent rect. 9 18
955 1067.53 humidity 70 1440 > th dose independent rect. 9 16
959 1067.58 radiation 10 1440 > th dose independent rect. 8 23