BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0679400 Os04g0679400|AK121152
(180 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27450.1 | chr4:13727665-13728683 REVERSE LENGTH=251 189 7e-49
AT3G15450.1 | chr3:5213050-5213998 FORWARD LENGTH=254 173 5e-44
AT3G22850.1 | chr3:8089067-8090275 FORWARD LENGTH=249 145 1e-35
AT5G43830.1 | chr5:17622593-17624239 REVERSE LENGTH=252 142 1e-34
AT5G19140.1 | chr5:6423398-6425785 FORWARD LENGTH=235 112 1e-25
AT5G65010.2 | chr5:25969224-25972278 FORWARD LENGTH=580 47 5e-06
AT5G10240.1 | chr5:3212934-3216418 REVERSE LENGTH=579 47 6e-06
>AT4G27450.1 | chr4:13727665-13728683 REVERSE LENGTH=251
Length = 250
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 103/118 (87%)
Query: 50 VVKDLSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSY 109
VVKDL GSF+FVV+D+K+G+VF AL +DG V LYWGIAADGSVVI D+ +++K GC KS+
Sbjct: 127 VVKDLDGSFSFVVYDSKAGSVFTALGSDGGVKLYWGIAADGSVVISDDLDVIKEGCAKSF 186
Query: 110 APFPVGCMFHSEGGLKSFEHPMNRLKAMPRVDSEGVMCGATFKVDTFTKINSMPRVGS 167
APFP GCMFHSEGGL SFEHPMN++KAMPRVDSEGV+CGA FKVD + ++NS+PR GS
Sbjct: 187 APFPTGCMFHSEGGLMSFEHPMNKIKAMPRVDSEGVLCGANFKVDVYNRVNSIPRRGS 244
>AT3G15450.1 | chr3:5213050-5213998 FORWARD LENGTH=254
Length = 253
Score = 173 bits (438), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 98/118 (83%)
Query: 50 VVKDLSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSY 109
V++ L GSFAFVV+D ++ +VF ALS+DG LYWGI+ DGSVV+ D+ +I+K GC KS+
Sbjct: 126 VLRGLEGSFAFVVYDTQTSSVFSALSSDGGESLYWGISGDGSVVMSDDIQIIKQGCAKSF 185
Query: 110 APFPVGCMFHSEGGLKSFEHPMNRLKAMPRVDSEGVMCGATFKVDTFTKINSMPRVGS 167
APFP GCMFHSE GLKSF+HP N +KAMPR+DSEGV+CGA+FKVD +KINS+PR GS
Sbjct: 186 APFPNGCMFHSETGLKSFDHPTNMMKAMPRIDSEGVLCGASFKVDACSKINSIPRRGS 243
>AT3G22850.1 | chr3:8089067-8090275 FORWARD LENGTH=249
Length = 248
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 84/118 (71%)
Query: 50 VVKDLSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSY 109
VV+D G F F+++D + VF A DG VPLYWG A+G +V+ D+ E VK GCGKS+
Sbjct: 123 VVRDFQGKFGFMLYDCSTQNVFLAGDVDGSVPLYWGTDAEGHLVVSDDVETVKKGCGKSF 182
Query: 110 APFPVGCMFHSEGGLKSFEHPMNRLKAMPRVDSEGVMCGATFKVDTFTKINSMPRVGS 167
APFP GC F S GGL+S+EHP N LK +PRVDS G +CG TFKVD+ K +MPRVGS
Sbjct: 183 APFPKGCFFTSSGGLRSYEHPSNELKPVPRVDSSGEVCGVTFKVDSEAKKEAMPRVGS 240
>AT5G43830.1 | chr5:17622593-17624239 REVERSE LENGTH=252
Length = 251
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 50 VVKDLSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSY 109
VV+D G FAF++FD+ VF A DG VP +WG A+G +V D E+VK GC KSY
Sbjct: 124 VVRDFHGKFAFILFDSVKKTVFAAADADGSVPFFWGTDAEGHLVFSDNTEMVKKGCAKSY 183
Query: 110 APFPVGCMFHSEGGLKSFEHPMNRLKAMPRVDSEGVMCGATFKVDTFTKI--NSMPRVGS 167
PFP GC F S GGL+SFEHP N LK +PRVDS G +CGATFKVD TK MPRV S
Sbjct: 184 GPFPKGCFFTSSGGLRSFEHPKNELKPVPRVDSSGDVCGATFKVDAETKREGTKMPRVDS 243
>AT5G19140.1 | chr5:6423398-6425785 FORWARD LENGTH=235
Length = 234
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Query: 50 VVKDLSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSY 109
VV LSG FAFVVFD + +F A G+VPLYWGI ADG V D+ +++KG CGKS
Sbjct: 124 VVAHLSGDFAFVVFDKSTSTLFVASDQVGKVPLYWGITADGYVAFADDVDLLKGACGKSL 183
Query: 110 APFPVGCMFHSE-GGLKSFEHPMNRLKAMPRVDSEGVMCGATFKVD 154
A FP GC + + GGL+SFE+P N++ A+P +EG + GATFKV+
Sbjct: 184 ASFPQGCYYSTALGGLRSFENPKNKITAVPA--NEGEIWGATFKVE 227
>AT5G65010.2 | chr5:25969224-25972278 FORWARD LENGTH=580
Length = 579
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 54 LSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSYAPFP 113
L G FAFV+ D + + A G PLY G DGSV E + + C + + FP
Sbjct: 117 LDGMFAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDC-EQFMSFP 175
Query: 114 VGCMFHS-EGGLKSFEHP 130
G ++ S +GGL+ + +P
Sbjct: 176 PGHIYSSKQGGLRRWYNP 193
>AT5G10240.1 | chr5:3212934-3216418 REVERSE LENGTH=579
Length = 578
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 54 LSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSYAPFP 113
L G FAFV+ D + + A G PLY G DGSV E + + C + + FP
Sbjct: 117 LDGMFAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDC-EQFMCFP 175
Query: 114 VGCMFHS-EGGLKSFEHPMNRLKAMPRVDSEGVMCGATFK 152
G ++ S +GGL+ + +P + +P + ++ TF+
Sbjct: 176 PGHIYSSKQGGLRRWYNPPWFSEVVPSTPYDPLVVRNTFE 215
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,452,388
Number of extensions: 129233
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 7
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)