BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0791200 Os03g0791200|J080304G13
         (78 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0791200  Similar to Aldehyde oxidase-2                       136   4e-33
Os03g0790700  Similar to Aldehyde oxidase-2                        89   5e-19
Os10g0138100  Similar to Aldehyde oxidase-2                        89   7e-19
Os03g0790900  Similar to Aldehyde oxidase-2                        89   7e-19
Os07g0164900  Similar to Aldehyde oxidase-2                        75   8e-15
Os07g0281800  Similar to Aldehyde oxidase-2                        69   5e-13

>Os03g0791200 Similar to Aldehyde oxidase-2
          Length = 78

 Score =  136 bits (342), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/78 (87%), Positives = 68/78 (87%)

Query: 1  GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGEXXXXXXXXXXLRDEG 60
          GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE          LRDEG
Sbjct: 1  GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGEAAAAAGVVGALRDEG 60

Query: 61 GDQSGRPGRSSPAPAARR 78
          GDQSGRPGRSSPAPAARR
Sbjct: 61 GDQSGRPGRSSPAPAARR 78



>Os03g0790700 Similar to Aldehyde oxidase-2
          Length = 143

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/45 (93%), Positives = 43/45 (95%)

Query: 1  GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
          GLVI+D TWTYKIPTVDTIPKQFNVELINSAR HKRVLSSKASGE
Sbjct: 34 GLVINDGTWTYKIPTVDTIPKQFNVELINSARDHKRVLSSKASGE 78



>Os10g0138100 Similar to Aldehyde oxidase-2
          Length = 1387

 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/45 (91%), Positives = 42/45 (93%)

Query: 1    GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
            GLVIHD TWTYKIPTVDTIPKQFNVELIN+AR H RVLSSKASGE
Sbjct: 1271 GLVIHDGTWTYKIPTVDTIPKQFNVELINTARHHSRVLSSKASGE 1315



>Os03g0790900 Similar to Aldehyde oxidase-2
          Length = 1375

 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/45 (93%), Positives = 43/45 (95%)

Query: 1    GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
            GLVI+D TWTYKIPTVDTIPKQFNVELINSAR HKRVLSSKASGE
Sbjct: 1266 GLVINDGTWTYKIPTVDTIPKQFNVELINSARDHKRVLSSKASGE 1310



>Os07g0164900 Similar to Aldehyde oxidase-2
          Length = 160

 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 39/45 (86%)

Query: 1  GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
          GL++ D TWTYKIPTVDTIPKQFNV+L+NS    KRVLSSKASGE
Sbjct: 50 GLLVSDGTWTYKIPTVDTIPKQFNVKLLNSGFHKKRVLSSKASGE 94



>Os07g0281800 Similar to Aldehyde oxidase-2
          Length = 288

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 1   GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
           GLVI +STW YKIP+VDTIPKQFN E++N+     RVLSSKASGE
Sbjct: 171 GLVISNSTWDYKIPSVDTIPKQFNAEVLNTGYHKHRVLSSKASGE 215



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,559,264
Number of extensions: 73201
Number of successful extensions: 153
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 6
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)