BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0786800 Os03g0786800|AK059186
(155 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0786800 Similar to Cullin-4A (CUL-4A) 315 9e-87
Os04g0643000 Similar to Cullin-3 (CUL-3). Splice isoform 2 135 8e-33
Os08g0170900 Cullin family protein 132 1e-31
Os02g0746000 Similar to Cullin-3 (CUL-3). Splice isoform 3 130 6e-31
Os01g0369200 Similar to Cullin-1 121 2e-28
Os01g0369000 Similar to Cullin-1 121 2e-28
Os05g0149600 Similar to Cullin-1 114 2e-26
AK110300 86 1e-17
>Os03g0786800 Similar to Cullin-4A (CUL-4A)
Length = 155
Score = 315 bits (807), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 AQKLSFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPL 60
AQKLSFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPL
Sbjct: 1 AQKLSFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPL 60
Query: 61 YRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLK 120
YRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLK
Sbjct: 61 YRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLK 120
Query: 121 FPIKPSDIKKRIESLIDREYLERDRSNPQIYNYLA 155
FPIKPSDIKKRIESLIDREYLERDRSNPQIYNYLA
Sbjct: 121 FPIKPSDIKKRIESLIDREYLERDRSNPQIYNYLA 155
>Os04g0643000 Similar to Cullin-3 (CUL-3). Splice isoform 2
Length = 731
Score = 135 bits (341), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 112/159 (70%), Gaps = 4/159 (2%)
Query: 1 AQKLSFLDIKESTGIEDKELRRTLQSLACGKVR-VLQKMPKGRDVEDKDEFVFNEEFSAP 59
A L++ DI+++TGI +L+R LQSLAC K + VL+K P +D+ + D F +N++F++
Sbjct: 573 ADGLTYGDIEQATGIPHADLKRCLQSLACVKGKNVLRKEPMSKDISEDDTFYYNDKFTSK 632
Query: 60 LYRIKVNAI-QMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQ 118
L ++K+ + KET E T +RV +DR+ Q++AAIVRIMK+R+ L H +ITE+ +Q
Sbjct: 633 LVKVKIGTVVAQKETEPEKLETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIITEVTKQ 692
Query: 119 L--KFPIKPSDIKKRIESLIDREYLERDRSNPQIYNYLA 155
L +F P IKKRIESLI+RE+LERD+ + ++Y YLA
Sbjct: 693 LQSRFLPNPVVIKKRIESLIEREFLERDKVDRKMYRYLA 731
>Os08g0170900 Cullin family protein
Length = 731
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 111/159 (69%), Gaps = 4/159 (2%)
Query: 1 AQKLSFLDIKESTGIEDKELRRTLQSLACGKVR-VLQKMPKGRDVEDKDEFVFNEEFSAP 59
A LS+ DI+++T I +L+R LQSLA K + VL+K P RD+ D D F N++F++
Sbjct: 573 ADCLSYRDIEQTTAIPSADLKRCLQSLALVKGKNVLRKEPMSRDISDDDNFYVNDKFTSK 632
Query: 60 LYRIKVNAIQM-KETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQ 118
L+++K+ + KE+ E T +RV +DR+ Q++AAIVRIMK+R+ L H ++TE+ +Q
Sbjct: 633 LFKVKIGTVATQKESEPEKMETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIVTEVTKQ 692
Query: 119 L--KFPIKPSDIKKRIESLIDREYLERDRSNPQIYNYLA 155
L +F P IKKR+ESLI+RE+LERD+++ ++Y YLA
Sbjct: 693 LQPRFMPNPVVIKKRVESLIEREFLERDKTDRKLYRYLA 731
>Os02g0746000 Similar to Cullin-3 (CUL-3). Splice isoform 3
Length = 736
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 109/156 (69%), Gaps = 4/156 (2%)
Query: 4 LSFLDIKESTGIEDKELRRTLQSLACGKVR-VLQKMPKGRDVEDKDEFVFNEEFSAPLYR 62
L++ DI++ T I +L+R LQSLAC K + VL+K P +D+ + D F FN++F++ L +
Sbjct: 581 LTYKDIEQDTAIPASDLKRCLQSLACVKGKNVLRKEPMSKDISEDDTFYFNDKFTSKLVK 640
Query: 63 IKVN-AIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQL-- 119
+K+ + KE+ E T +RV +DR+ Q++AAIVRIMK+R+ L H ++ E+ +QL
Sbjct: 641 VKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIVAEVTKQLQA 700
Query: 120 KFPIKPSDIKKRIESLIDREYLERDRSNPQIYNYLA 155
+F P IKKRIESLI+RE+LERD+++ ++Y YLA
Sbjct: 701 RFMPNPVVIKKRIESLIEREFLERDKADRKLYRYLA 736
>Os01g0369200 Similar to Cullin-1
Length = 746
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 6/157 (3%)
Query: 1 AQKLSFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPL 60
A KLS+ DI + D + R L SL+C K ++L K P R + +DEF FN +F+ +
Sbjct: 594 ADKLSYSDIVSQLKLSDDDAVRLLHSLSCAKYKILNKEPSNRVISPEDEFEFNSKFTDRM 653
Query: 61 YRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLK 120
RIKV Q ++E + V +DR++ +DA++VRIMK+RK L H L+ E +QL
Sbjct: 654 RRIKVPLPQ----IDEKKKVVDDVNKDRRFAIDASLVRIMKSRKVLGHQQLVAECVEQLS 709
Query: 121 FPIKPS--DIKKRIESLIDREYLERDRSNPQIYNYLA 155
KP IK+RIE LI REYLERD N Q Y YLA
Sbjct: 710 RMFKPDIKIIKRRIEDLISREYLERDSENAQTYKYLA 746
>Os01g0369000 Similar to Cullin-1
Length = 744
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 3 KLSFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPLYR 62
+LS+ +I + D ++ R L SL+C K ++L K P R + D F FN +F+ L R
Sbjct: 594 RLSYSEIVTQLNLSDDDVVRLLHSLSCAKYKILSKEPNNRSISPNDVFEFNSKFTDKLRR 653
Query: 63 IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKFP 122
+K+ V+E E V +DR+Y +DA+IVRIMK+RK L H L+ E +QL
Sbjct: 654 LKIPL----PPVDEKKKVVEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRM 709
Query: 123 IKPS--DIKKRIESLIDREYLERDRSNPQIYNYLA 155
KP IKKRIE LI R+YLERD+ NP +Y YLA
Sbjct: 710 FKPDFKAIKKRIEDLITRDYLERDKDNPNVYRYLA 744
>Os05g0149600 Similar to Cullin-1
Length = 742
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 6/157 (3%)
Query: 1 AQKLSFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPL 60
+ +L++ +I + D ++ R L SL+C K ++L K P R + D F FN +F+ +
Sbjct: 590 SDRLTYSEIVTQLNLSDDDVVRLLHSLSCAKYKILNKEPANRSISPNDVFEFNSKFTDRM 649
Query: 61 YRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLK 120
RIK+ V+E E V +DR+Y +DA+IVRIMK+RK + H L+ E +QL
Sbjct: 650 RRIKIPL----PPVDEKKKVVEDVDKDRRYAIDASIVRIMKSRKVMGHQQLVAECVEQLS 705
Query: 121 FPIKPS--DIKKRIESLIDREYLERDRSNPQIYNYLA 155
KP IKKRIE LI R+YLER++ N +Y YLA
Sbjct: 706 RMFKPDFKAIKKRIEDLITRDYLEREKDNANVYRYLA 742
>AK110300
Length = 809
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 4 LSFLDIKESTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDKDEFVFNEEFSAPLYRI 63
LS ++ + TG+ + L+ L+ L GK +VL K P + N FS R+
Sbjct: 654 LSIEELAKVTGLTPENLKAQLRVLVSGKYKVLLKRP-AEGYKPDHRVSVNLAFSDAQLRV 712
Query: 64 KVN-AIQMKETVEENT--STTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLK 120
++ A+ + V E E V +DR++ V+A IVRIMK RKTL H L+ E+ QQL
Sbjct: 713 RIPPAMVVGGAVSEKEREKDVESVEEDRRHAVEACIVRIMKARKTLEHQQLMLEVSQQLM 772
Query: 121 --FPIKPSDIKKRIESLIDREYLERDRSNPQIYNYLA 155
F P IKKRIE LI REYLERD Y+Y+A
Sbjct: 773 QFFKPDPKAIKKRIEDLIAREYLERDAEKNTQYHYIA 809
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,237,503
Number of extensions: 146840
Number of successful extensions: 367
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 8
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)