Os04g0643000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cullin-3 (CUL-3). Splice isoform 2.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0643000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Cullin-3 (CUL-3). Splice isoform 2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.37 | 0.184 | 9.86 | 0.648 | 0.377 | 0.427 | 0.0963 | 0.378 | -0.0151 | 10.9 | 66.44 | 431 | -- | -- |
| 15.43 | 0.183 | 9.87 | 0.639 | 0.381 | 0.472 | 0.101 | -- | -0.0109 | 10.9 | 65.38 | 447 | -- | -- |
| 15.41 | 0.183 | 9.86 | 0.653 | 0.376 | 0.427 | -- | 0.399 | -0.0162 | 10.8 | 67 | 424 | -- | -- |
| 15.48 | 0.183 | 9.87 | 0.64 | 0.379 | 0.477 | -- | -- | -0.011 | 10.9 | 65.47 | 436 | -- | -- |
| 22.05 | 0.22 | 9.88 | 0.674 | -- | 0.441 | -- | 0.38 | -0.0369 | -- | 85 | 42 | -- | -- |
| 18.98 | 0.204 | 9.88 | 0.689 | 0.367 | -- | 0.172 | -- | -0.0494 | 12.3 | -- | -- | -- | -- |
| 19.1 | 0.205 | 9.88 | 0.695 | 0.367 | -- | -- | -- | -0.0488 | 12.2 | -- | -- | -- | -- |
| 22.25 | 0.22 | 9.88 | 0.673 | -- | 0.413 | -- | -- | -0.035 | -- | 85 | 38 | -- | -- |
| 25.96 | 0.237 | 9.88 | -- | 0.389 | 0.681 | -- | -- | -0.0765 | 10.7 | 58.34 | 465 | -- | -- |
| 27.57 | 0.245 | 9.89 | 0.683 | -- | -- | -- | -- | -0.0544 | -- | -- | -- | -- | -- |
| 31.84 | 0.264 | 9.9 | -- | 0.357 | -- | -- | -- | -0.126 | 12.1 | -- | -- | -- | -- |
| 33.6 | 0.27 | 9.89 | -- | -- | 0.586 | -- | -- | -0.0962 | -- | 71.75 | 245 | -- | -- |
| 39.88 | 0.295 | 9.9 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.56 | humidity | 50 | 270 | > th | dose independent | rect. | 8 | 13 |
| 2 | 14.71 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 17 |
| 4 | 14.80 | humidity | 70 | 90 | > th | dose independent | sin | 14 | NA |
| 6 | 14.81 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 5 |
| 21 | 14.94 | humidity | 70 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 22 | 14.95 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 46 | 15.01 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 19 |
| 67 | 15.05 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 7 |
| 81 | 15.07 | humidity | 70 | 270 | < th | dose dependent | sin | 17 | NA |
| 94 | 15.11 | humidity | 70 | 90 | < th | dose independent | sin | 14 | NA |
| 119 | 15.15 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 12 |
| 137 | 15.22 | humidity | 70 | 270 | < th | dose independent | sin | 16 | NA |
| 149 | 15.23 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 23 |
| 162 | 15.27 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 6 |
| 197 | 15.30 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 201 | 15.31 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 1 |
| 233 | 15.33 | temperature | 30 | 270 | < th | dose independent | sin | 16 | NA |
| 318 | 15.40 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 11 |
| 367 | 15.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 472 | 15.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 13 |
| 474 | 15.47 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 497 | 15.49 | temperature | 30 | 270 | > th | dose independent | sin | 15 | NA |
| 505 | 15.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 506 | 15.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 527 | 15.51 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 562 | 15.54 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 23 |
| 579 | 15.56 | humidity | 50 | 270 | > th | dose independent | sin | 1 | NA |
| 643 | 15.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 651 | 15.60 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 14 |
| 677 | 15.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 13 |
| 756 | 15.65 | temperature | 25 | 90 | > th | dose dependent | sin | 14 | NA |
| 789 | 15.67 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 6 |
| 796 | 15.67 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 894 | 15.70 | temperature | 25 | 270 | > th | dose dependent | sin | 16 | NA |
| 898 | 15.70 | humidity | 60 | 270 | < th | dose dependent | no | NA | NA |