Os05g0149600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cullin-1.
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Os05g0149600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cullin-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.78 | 0.154 | 14 | 0.768 | 0.372 | 0.267 | 0.196 | -0.0468 | 0.401 | 0.638 | 19.64 | 1397 | -- | -- |
| 10.77 | 0.153 | 14 | 0.763 | 0.379 | 0.268 | 0.193 | -- | 0.399 | 0.622 | 19.63 | 1370 | -- | -- |
| 10.92 | 0.154 | 14 | 0.771 | 0.379 | 0.269 | -- | -0.11 | 0.403 | 0.629 | 19.57 | 1364 | -- | -- |
| 10.94 | 0.154 | 14 | 0.76 | 0.379 | 0.267 | -- | -- | 0.4 | 0.63 | 19.64 | 1368 | -- | -- |
| 16.34 | 0.189 | 14.1 | 0.758 | -- | 0.225 | -- | 0.062 | 0.334 | -- | 16.86 | 1770 | -- | -- |
| 13.43 | 0.172 | 14.1 | 0.741 | 0.341 | -- | 0.157 | -- | 0.341 | 0.63 | -- | -- | -- | -- |
| 13.54 | 0.172 | 14.1 | 0.735 | 0.341 | -- | -- | -- | 0.34 | 0.66 | -- | -- | -- | -- |
| 16.34 | 0.189 | 14.1 | 0.758 | -- | 0.228 | -- | -- | 0.335 | -- | 17.02 | 1749 | -- | -- |
| 21.54 | 0.216 | 14 | -- | 0.352 | 0.353 | -- | -- | 0.322 | 0.582 | 29.99 | 27100 | -- | -- |
| 20.8 | 0.213 | 14.1 | 0.748 | -- | -- | -- | -- | 0.346 | -- | -- | -- | -- | -- |
| 27.79 | 0.247 | 14.1 | -- | 0.352 | -- | -- | -- | 0.258 | 0.759 | -- | -- | -- | -- |
| 28.12 | 0.247 | 14.1 | -- | -- | 0.544 | -- | -- | 0.206 | -- | 39.99 | 47520 | -- | -- |
| 35.54 | 0.278 | 14.1 | -- | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.18 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 2 | 10.18 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 3 | 10.19 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 6 | 10.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 9 | 10.40 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 10 | 10.40 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 16 | 10.46 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 18 | 10.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 24 | 10.50 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 25 | 10.50 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 28 | 10.51 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 36 | 10.55 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 58 | 10.60 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 114 | 10.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 115 | 10.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 133 | 10.82 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 147 | 10.84 | radiation | 20 | 1440 | < th | dose independent | sin | 22 | NA |
| 153 | 10.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 175 | 10.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 181 | 10.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 186 | 10.87 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 231 | 10.88 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 356 | 10.89 | wind | 7 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 403 | 10.91 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 409 | 10.91 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 421 | 10.93 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 431 | 10.94 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 445 | 10.95 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 464 | 10.97 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 475 | 10.98 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 479 | 10.98 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 492 | 10.98 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 515 | 10.99 | radiation | 40 | 1440 | < th | dose dependent | sin | 21 | NA |
| 733 | 11.03 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 790 | 11.04 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 792 | 11.04 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 798 | 11.04 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 7 |