BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0785500 Os03g0785500|AK067718
(351 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0785500 Protein of unknown function DUF284, transmembr... 698 0.0
Os06g0665000 Protein of unknown function DUF284, transmembr... 409 e-114
Os02g0173800 Protein of unknown function DUF284, transmembr... 409 e-114
Os05g0529900 Protein of unknown function DUF284, transmembr... 378 e-105
Os03g0120100 Protein of unknown function DUF284, transmembr... 377 e-105
Os09g0560600 Protein of unknown function DUF284, transmembr... 352 2e-97
>Os03g0785500 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 351
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/351 (95%), Positives = 335/351 (95%)
Query: 1 MMEEXXXXXXXXXXXXXXXXQRGFPPARSGVFYRFTQQNLPAWKPAMTPGCVITIFLMIG 60
MMEE QRGFPPARSGVFYRFTQQNLPAWKPAMTPGCVITIFLMIG
Sbjct: 1 MMEEASTSASGGGGAAANGGQRGFPPARSGVFYRFTQQNLPAWKPAMTPGCVITIFLMIG 60
Query: 61 VTFVPVGLVCLHASNHVAEIAHRYDIDCVPNAYKRNRQAYIKDSSISKNCTQEVKVKYLM 120
VTFVPVGLVCLHASNHVAEIAHRYDIDCVPNAYKRNRQAYIKDSSISKNCTQEVKVKYLM
Sbjct: 61 VTFVPVGLVCLHASNHVAEIAHRYDIDCVPNAYKRNRQAYIKDSSISKNCTQEVKVKYLM 120
Query: 121 RAPIYVYYELDNFYQNHRRYVKSRSDKQLRYGQKYTHSSCDPIERNDGLPIVPCGLIAWS 180
RAPIYVYYELDNFYQNHRRYVKSRSDKQLRYGQKYTHSSCDPIERNDGLPIVPCGLIAWS
Sbjct: 121 RAPIYVYYELDNFYQNHRRYVKSRSDKQLRYGQKYTHSSCDPIERNDGLPIVPCGLIAWS 180
Query: 181 LFNDTYGFTCGSTEIKVNRKNISWKSDREHKFGKDVYPFNFQNGSLIGGGKLDPALPLNQ 240
LFNDTYGFTCGSTEIKVNRKNISWKSDREHKFGKDVYPFNFQNGSLIGGGKLDPALPLNQ
Sbjct: 181 LFNDTYGFTCGSTEIKVNRKNISWKSDREHKFGKDVYPFNFQNGSLIGGGKLDPALPLNQ 240
Query: 241 QEDLIVWMRTAALPQFRKLYGVIEEDLQADEIITMHIANNYNTYSFGGKKSLILTTSTWL 300
QEDLIVWMRTAALPQFRKLYGVIEEDLQADEIITMHIANNYNTYSFGGKKSLILTTSTWL
Sbjct: 241 QEDLIVWMRTAALPQFRKLYGVIEEDLQADEIITMHIANNYNTYSFGGKKSLILTTSTWL 300
Query: 301 GGKNDFLGYAYLITGSLSLFLTILFALIHVKNPRPHGDANYLSWNRPNSNS 351
GGKNDFLGYAYLITGSLSLFLTILFALIHVKNPRPHGDANYLSWNRPNSNS
Sbjct: 301 GGKNDFLGYAYLITGSLSLFLTILFALIHVKNPRPHGDANYLSWNRPNSNS 351
>Os06g0665000 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 358
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/317 (61%), Positives = 243/317 (76%), Gaps = 2/317 (0%)
Query: 32 FYRFTQQNLPAWKPAMTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDIDCVPN 91
+ +FTQQ LPA KP +TP V+++F ++GV FVPVG+V L A+ +V EI RYD CVP
Sbjct: 37 YSKFTQQELPACKPILTPKWVVSVFFLVGVIFVPVGVVSLLAAQNVVEIVDRYDDACVPA 96
Query: 92 AYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSDKQLRY 151
N+ AYI++ +ISK CT+ + + M PI+VYY+LDNFYQNHRRYVKSR+D QLR
Sbjct: 97 NMTDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKSRNDGQLRD 156
Query: 152 GQKYTHSS-CDPIERN-DGLPIVPCGLIAWSLFNDTYGFTCGSTEIKVNRKNISWKSDRE 209
K +S C+P + DG PIVPCGLIAWSLFNDTY FT G+ + V++K+ISWKSDRE
Sbjct: 157 AAKANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKDISWKSDRE 216
Query: 210 HKFGKDVYPFNFQNGSLIGGGKLDPALPLNQQEDLIVWMRTAALPQFRKLYGVIEEDLQA 269
HKFGK+VYP NFQNG L GGG LDPA+PL++QEDLIVWMRTAALP FRKLYG I DL+
Sbjct: 217 HKFGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYGRIYVDLKK 276
Query: 270 DEIITMHIANNYNTYSFGGKKSLILTTSTWLGGKNDFLGYAYLITGSLSLFLTILFALIH 329
++ IT+ ++NNYNTY+FGGKK L+L+T+TWLGGKNDFLG+AY+I G + FL F L++
Sbjct: 277 NDTITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCFFLAFAFTLLY 336
Query: 330 VKNPRPHGDANYLSWNR 346
+ PR GD NYLSWNR
Sbjct: 337 LIKPRKLGDHNYLSWNR 353
>Os02g0173800 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 350
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/321 (62%), Positives = 239/321 (74%), Gaps = 2/321 (0%)
Query: 27 ARSGVFYRFTQQNLPAWKPAMTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDI 86
R + +FTQQ LPA KP +TP VI++F+++GV FVP+GLV L AS V EI RYD
Sbjct: 26 TRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRYDD 85
Query: 87 DCVPNAYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSD 146
CVP A ++ AYI++ +ISKNC + +KV M API+VYY+LDNFYQNHRRYVKSRSD
Sbjct: 86 ACVP-ANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSRSD 144
Query: 147 KQLRYGQKYTHSS-CDPIERNDGLPIVPCGLIAWSLFNDTYGFTCGSTEIKVNRKNISWK 205
QLR +K +S CDP +G+ IVPCGLIAWS+FNDTYGF S + V++KNISWK
Sbjct: 145 AQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNISWK 204
Query: 206 SDREHKFGKDVYPFNFQNGSLIGGGKLDPALPLNQQEDLIVWMRTAALPQFRKLYGVIEE 265
SDREHKFG+DV+P NFQNGSLIGG LDP L++QEDLIVWMRTAALP FRKLYG I
Sbjct: 205 SDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGRIHT 264
Query: 266 DLQADEIITMHIANNYNTYSFGGKKSLILTTSTWLGGKNDFLGYAYLITGSLSLFLTILF 325
DL+ + IT+ + NNYNTYSF GKK L+L+TSTWLGGKNDFLG AYL G L FL F
Sbjct: 265 DLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGLCFFLAFAF 324
Query: 326 ALIHVKNPRPHGDANYLSWNR 346
L+++ PR GD NYLSWNR
Sbjct: 325 TLLYLIKPRKMGDNNYLSWNR 345
>Os05g0529900 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 325
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/321 (54%), Positives = 233/321 (72%), Gaps = 5/321 (1%)
Query: 32 FYRFTQQNLPAWKPAMTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDIDCVPN 91
+ +FTQQ LPAWKP TPG VI F +IG+ F+P+GLV + AS V E+ +YD +CV
Sbjct: 5 YSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGECVT- 63
Query: 92 AYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSDKQLRY 151
++ +I+D+ K CT+ + V M+ PI VYY+L+NFYQNHRRYVKSRSDKQLR
Sbjct: 64 --ANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLRS 121
Query: 152 GQ-KYTHSSCDPIERNDG-LPIVPCGLIAWSLFNDTYGFTCGSTEIKVNRKNISWKSDRE 209
+ +CDP ++G PIVPCGLIAWSLFNDT+ F+ ++VN+KNI+W SDR
Sbjct: 122 KEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSVNKKTVQVNKKNIAWSSDRT 181
Query: 210 HKFGKDVYPFNFQNGSLIGGGKLDPALPLNQQEDLIVWMRTAALPQFRKLYGVIEEDLQA 269
KFG DV+P NFQ G LIGGG+L+ LPL++QEDLIVWMRTAALP FRKLYG IE D+ A
Sbjct: 182 IKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMA 241
Query: 270 DEIITMHIANNYNTYSFGGKKSLILTTSTWLGGKNDFLGYAYLITGSLSLFLTILFALIH 329
+ IT+ I NNYNTYSFGG K+L+L+T++W+GGKN+F+G+AY+ G++S + + F ++
Sbjct: 242 SDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVGLN 301
Query: 330 VKNPRPHGDANYLSWNRPNSN 350
+ PR GD +YLSWN+ N +
Sbjct: 302 MVKPRTLGDPSYLSWNKENPD 322
>Os03g0120100 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 340
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/319 (55%), Positives = 234/319 (73%), Gaps = 8/319 (2%)
Query: 32 FYRFTQQNLPAWKPAMTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDIDCVPN 91
+ +FTQQ LPA KP +TPG V+ FL+IG+ FVP+GL L AS + E+ RYD +CV
Sbjct: 19 YSKFTQQELPACKPLLTPGIVVATFLLIGIIFVPIGLASLSASQEIVELVDRYDTNCVST 78
Query: 92 AYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSDKQLRY 151
++ +I+++ K CT+ + V M++PI +YY++ +FYQNHRRYVKSRSDKQLRY
Sbjct: 79 L---DKVGFIQNTDTDKTCTRTLTVPKHMKSPIQIYYQIGDFYQNHRRYVKSRSDKQLRY 135
Query: 152 GQK-YTHSSCDPIERN--DGLPIVPCGLIAWSLFNDTYGFTCGSTEIKVNRKNISWKSDR 208
+ CDP E N DG PI+PCGLIAWSLFNDTY + I+VN+K+I+WKSD+
Sbjct: 136 KNAVHLTKDCDP-EGNTVDGAPIIPCGLIAWSLFNDTYTISVNKKAIEVNKKDIAWKSDK 194
Query: 209 EHKFGKDVYPFNFQNGSLIGGGKLDPALPLNQQEDLIVWMRTAALPQFRKLYGVIEEDLQ 268
KFG D+YP NFQ GSLIGG KL+ ++PL++QEDLIVWMRTAALP FRKLYG IE D+
Sbjct: 195 TDKFGSDIYPSNFQKGSLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGRIETDIM 254
Query: 269 ADEIITMHIANNYNTYSFGGKKSLILTTSTWLGGKNDFLGYAYLITGSLSLFLTILF-AL 327
A++ +T+ I NNYNTYSFGG K+L+L+T++W+GGKN+F+G AYL G L +FL + F L
Sbjct: 255 ANDQLTVVIQNNYNTYSFGGSKALVLSTTSWIGGKNNFIGVAYLTIGGLCIFLAVGFVVL 314
Query: 328 IHVKNPRPHGDANYLSWNR 346
+++ PR GD +YLSWNR
Sbjct: 315 LYMVKPRTLGDPSYLSWNR 333
>Os09g0560600 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 351
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 167/287 (58%), Positives = 212/287 (73%), Gaps = 3/287 (1%)
Query: 32 FYRFTQQNLPAWKPAMTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDIDCVPN 91
++RFTQQ L A KP + P VI + + +G+ F+P+GL C+ ASN V E+ RYD CVP
Sbjct: 30 YHRFTQQELQACKPILIPQTVILVLVFVGLIFIPIGLACIAASNKVVELVDRYDTKCVPR 89
Query: 92 AYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSDKQLRY 151
RN+ A+I++SSI K CT+ KV M+ PIY+YY+LD FYQNHRRYVKS +D QLR
Sbjct: 90 NMLRNKVAFIQNSSIDKTCTRVFKVPKDMKKPIYIYYQLDKFYQNHRRYVKSLNDMQLRN 149
Query: 152 GQKYTHSS-CDPIERNDGLPIVPCGLIAWSLFNDTYGFT--CGSTEIKVNRKNISWKSDR 208
+K + C P +G PIVPCGLIAWSLFNDTY FT G+ ++VN+ ISWKS+R
Sbjct: 150 PKKVADTQYCSPEATANGRPIVPCGLIAWSLFNDTYSFTRGHGNETLRVNKDGISWKSER 209
Query: 209 EHKFGKDVYPFNFQNGSLIGGGKLDPALPLNQQEDLIVWMRTAALPQFRKLYGVIEEDLQ 268
+FGK+VYP NFQNG+LIGGG+L+P+ PL++QEDLIVWMR AALP FRKLYG I+ DLQ
Sbjct: 210 NRRFGKNVYPKNFQNGTLIGGGQLNPSKPLSEQEDLIVWMRIAALPTFRKLYGRIDMDLQ 269
Query: 269 ADEIITMHIANNYNTYSFGGKKSLILTTSTWLGGKNDFLGYAYLITG 315
A + + + + NNYN+YSF GKKSL+L+T+ WLGGKN FLG AY I G
Sbjct: 270 AGDRVEVTMQNNYNSYSFNGKKSLVLSTAGWLGGKNAFLGRAYAIVG 316
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,630,475
Number of extensions: 540235
Number of successful extensions: 872
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 6
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)