BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0748500 Os03g0748500|AY644646
         (252 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0748500  Flavodoxin/nitric oxide synthase domain contai...   350   8e-97
Os05g0501300  Similar to Flavoprotein wrbA (Trp repressor bi...   183   1e-46
Os01g0784800  Flavodoxin/nitric oxide synthase domain contai...   179   2e-45
Os08g0139200  Similar to F-171-b1_1 (Fragment)                    176   1e-44
Os10g0436800  Similar to 1,4-benzoquinone reductase                97   8e-21

>Os03g0748500 Flavodoxin/nitric oxide synthase domain containing protein
          Length = 252

 Score =  350 bits (897), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 186/252 (73%), Positives = 186/252 (73%)

Query: 1   MGKGGGCIPSKRHRXXXXXXXXXSHSHQRERTSIXXXXXXXXXVRIYVVFYSMYGHVRLL 60
           MGKGGGCIPSKRHR         SHSHQRERTSI         VRIYVVFYSMYGHVRLL
Sbjct: 1   MGKGGGCIPSKRHRAAAAAAAPASHSHQRERTSIPAPAAAPRPVRIYVVFYSMYGHVRLL 60

Query: 61  ARAVARGVGSVPGARAILFRVPETLPPAVLARMEAXXXXXXXXXXXXXXXXXXXXLPDAD 120
           ARAVARGVGSVPGARAILFRVPETLPPAVLARMEA                    LPDAD
Sbjct: 61  ARAVARGVGSVPGARAILFRVPETLPPAVLARMEADDGGGGGDGEDVIPVVDPDGLPDAD 120

Query: 121 GFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVSXXXXXXXXXXXXXXXIT 180
           GFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS               IT
Sbjct: 121 GFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVSTGTQAGGQETTAWTAIT 180

Query: 181 QLAHHGMLFVPIGYTFXXXXXXXXXXXXXSPYGAGVFSGDGSRPPSELELALAEHHGKYM 240
           QLAHHGMLFVPIGYTF             SPYGAGVFSGDGSRPPSELELALAEHHGKYM
Sbjct: 181 QLAHHGMLFVPIGYTFGEGMLEMGELRGGSPYGAGVFSGDGSRPPSELELALAEHHGKYM 240

Query: 241 ATLVKKMVHGAS 252
           ATLVKKMVHGAS
Sbjct: 241 ATLVKKMVHGAS 252



>Os05g0501300 Similar to Flavoprotein wrbA (Trp repressor binding protein)
          Length = 205

 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 121/209 (57%), Gaps = 8/209 (3%)

Query: 44  VRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEAXXXXXXXX 103
           V++YVV+YSMYGHV  LA  + +G  SV G    +++VPETL   VL +M A        
Sbjct: 3   VKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDAPV 62

Query: 104 XXXXXXXXXXXXLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS 163
                       L +ADG LFGFP RFG M AQM+AFFD+T  L R Q LAGKPAG+F S
Sbjct: 63  IAPQE-------LAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFS 115

Query: 164 XXXXXXXXXXXXXXXITQLAHHGMLFVPIGYTFXXXXXXXXXXXXXSPYGAGVFSGDGSR 223
                          +TQLAHHGM+FVP+GYTF             SPYGAG F+GDGSR
Sbjct: 116 TGTQGGGQETTPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSR 175

Query: 224 PPSELELALAEHHGKYMATLVKKMVHGAS 252
            PSE EL  A H GKY A + KK+  GAS
Sbjct: 176 WPSEAELEHAFHQGKYFAGIAKKL-KGAS 203



>Os01g0784800 Flavodoxin/nitric oxide synthase domain containing protein
          Length = 203

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/204 (47%), Positives = 117/204 (57%), Gaps = 7/204 (3%)

Query: 44  VRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEAXXXXXXXX 103
           V++YVV+YSMYGHV  LA  + +G  S+ G  A +++VPETL   VL +M A        
Sbjct: 3   VKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDVPT 62

Query: 104 XXXXXXXXXXXXLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS 163
                       L +ADG LFGFP RFG M AQM+AFFD+T  L   Q LAGKPAG+F S
Sbjct: 63  ITPQE-------LTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFS 115

Query: 164 XXXXXXXXXXXXXXXITQLAHHGMLFVPIGYTFXXXXXXXXXXXXXSPYGAGVFSGDGSR 223
                          ITQL HHGM+FVP+GYTF             SPYGAG F+ DGSR
Sbjct: 116 TGTQGGGQETTPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSR 175

Query: 224 PPSELELALAEHHGKYMATLVKKM 247
            P+E+EL  A H GKY A + KK+
Sbjct: 176 WPTEMELEHAFHQGKYFAGIAKKL 199



>Os08g0139200 Similar to F-171-b1_1 (Fragment)
          Length = 203

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 115/203 (56%), Gaps = 7/203 (3%)

Query: 45  RIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEAXXXXXXXXX 104
           +IY+V+YSMYGHV  LA  + +G  SV G    L++VPETL   VL +M A         
Sbjct: 4   KIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDVPII 63

Query: 105 XXXXXXXXXXXLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVSX 164
                      L +ADG +FGFP RFG M AQ +AF D+T  L R Q+LAGKPAG+F S 
Sbjct: 64  TPAE-------LAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYST 116

Query: 165 XXXXXXXXXXXXXXITQLAHHGMLFVPIGYTFXXXXXXXXXXXXXSPYGAGVFSGDGSRP 224
                         ITQL HHGM+FVP+GYTF             SPYG+G F+GDGSR 
Sbjct: 117 GSQGGGQETTPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRV 176

Query: 225 PSELELALAEHHGKYMATLVKKM 247
            +ELEL  A H GKY A + KK+
Sbjct: 177 ATELELQQAFHQGKYFAGIAKKL 199



>Os10g0436800 Similar to 1,4-benzoquinone reductase
          Length = 83

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 52/71 (73%)

Query: 179 ITQLAHHGMLFVPIGYTFXXXXXXXXXXXXXSPYGAGVFSGDGSRPPSELELALAEHHGK 238
           ITQ+ HHGMLFVPIGYTF             SPYGAGVF+GDGSR PSE ELALAEH GK
Sbjct: 12  ITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQGK 71

Query: 239 YMATLVKKMVH 249
           YMA++VKK+  
Sbjct: 72  YMASIVKKLAQ 82



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,058,098
Number of extensions: 217334
Number of successful extensions: 461
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 5
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)