BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0744600 Os03g0744600|AB110189
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0744600 Similar to Ripening-associated protein (Fragment) 467 e-132
AK060366 467 e-132
Os03g0796000 Similar to Ripening-associated protein (Fragment) 271 3e-73
Os11g0147800 Similar to Wali7 protein (Fragment) 203 1e-52
Os12g0145100 Similar to Wali7 protein (Fragment) 198 3e-51
Os04g0679400 Similar to Ripening-associated protein (Fragment) 139 2e-33
>Os03g0744600 Similar to Ripening-associated protein (Fragment)
Length = 251
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/251 (92%), Positives = 231/251 (92%)
Query: 1 MLAVFDPTVAKCPEGLRSPPVXXXXXXXXXXXXXXXXXXXXHADAVTVSLGPAGALAYSA 60
MLAVFDPTVAKCPEGLRSPPV HADAVTVSLGPAGALAYSA
Sbjct: 1 MLAVFDPTVAKCPEGLRSPPVAGGAVAAGGAGALMKGFAGAHADAVTVSLGPAGALAYSA 60
Query: 61 ANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEVTILIEAYRTLRDRGPL 120
ANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEVTILIEAYRTLRDRGPL
Sbjct: 61 ANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEVTILIEAYRTLRDRGPL 120
Query: 121 PASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASC 180
PASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASC
Sbjct: 121 PASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASC 180
Query: 181 GNSFAPFPKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPR 240
GNSFAPFPKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPR
Sbjct: 181 GNSFAPFPKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPR 240
Query: 241 VGSAADWSNHF 251
VGSAADWSNHF
Sbjct: 241 VGSAADWSNHF 251
>AK060366
Length = 251
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/251 (92%), Positives = 231/251 (92%)
Query: 1 MLAVFDPTVAKCPEGLRSPPVXXXXXXXXXXXXXXXXXXXXHADAVTVSLGPAGALAYSA 60
MLAVFDPTVAKCPEGLRSPPV HADAVTVSLGPAGALAYSA
Sbjct: 1 MLAVFDPTVAKCPEGLRSPPVAGGAVAAGGAGALMKGFAGAHADAVTVSLGPAGALAYSA 60
Query: 61 ANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEVTILIEAYRTLRDRGPL 120
ANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEVTILIEAYRTLRDRGPL
Sbjct: 61 ANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEVTILIEAYRTLRDRGPL 120
Query: 121 PASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASC 180
PASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASC
Sbjct: 121 PASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASC 180
Query: 181 GNSFAPFPKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPR 240
GNSFAPFPKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPR
Sbjct: 181 GNSFAPFPKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPR 240
Query: 241 VGSAADWSNHF 251
VGSAADWSNHF
Sbjct: 241 VGSAADWSNHF 251
>Os03g0796000 Similar to Ripening-associated protein (Fragment)
Length = 190
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 122/184 (66%), Positives = 155/184 (84%), Gaps = 1/184 (0%)
Query: 69 RLFGAVNDIFCLFQGHIENIASLKQHYGL-SKTATEVTILIEAYRTLRDRGPLPASQVVR 127
RLF A ++IFCLFQG IENIA LKQ YGL +K +TE+ I+IEAYRTLRDRGP PA QVVR
Sbjct: 7 RLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGPYPADQVVR 66
Query: 128 DLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASCGNSFAPF 187
D++GKF F+LYD + S F+A DADGS+PF+WGVD ++ LV SD+ +++ +CG S APF
Sbjct: 67 DINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDSRLVVSDDDEIVNKACGKSSAPF 126
Query: 188 PKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPRVGSAADW 247
PKG F+TTSGGLQS+EHP+NE+KPVPR+DS+G++CG+ Y VD++AKKDS IPRVGSAADW
Sbjct: 127 PKGFFFTTSGGLQSYEHPMNEVKPVPRLDSKGEVCGTTYTVDAKAKKDSSIPRVGSAADW 186
Query: 248 SNHF 251
S+ +
Sbjct: 187 SSQY 190
>Os11g0147800 Similar to Wali7 protein (Fragment)
Length = 237
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 136/187 (72%), Gaps = 3/187 (1%)
Query: 45 AVTVSLGPAGALAYSAANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEV 104
AV++ LG G LAYS ANQS L PR F + +DIFCLF+G ++N+ L Q YGLSK A EV
Sbjct: 44 AVSLQLGDLGHLAYSHANQSLLRPRSFASKDDIFCLFEGVLDNLGRLSQQYGLSKGANEV 103
Query: 105 TILIEAYRTLRDRGPLPASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSE 164
++IEAY+TLRDR P PAS ++ L+G + F+L+D + S VA+D +G +P FWG+ ++
Sbjct: 104 LLVIEAYKTLRDRAPYPASFMLSQLTGSYAFVLFDKSTSSLLVASDPEGKVPLFWGITAD 163
Query: 165 NHLVFSDNVDLLKASCGNSFAPFPKGCFYTTS-GGLQSFEHPLNELKPVPRVDSQGQMCG 223
+ FS+++DLLK SCG S APFP+GCFY+ + GGL+ +E+P N++ VP ++ ++CG
Sbjct: 164 GSVAFSNDIDLLKGSCGKSLAPFPQGCFYSNALGGLKCYENPKNKVTAVPA--NEEEICG 221
Query: 224 SNYKVDS 230
+ +KV+S
Sbjct: 222 ATFKVES 228
>Os12g0145100 Similar to Wali7 protein (Fragment)
Length = 238
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 134/188 (71%), Gaps = 5/188 (2%)
Query: 45 AVTVSLGPAGALAYSAANQSPLVPRLFGAVNDIFCLFQGHIENIASLKQHYGLSKTATEV 104
AV+V LG G LAYS ANQ+ L PR F A +DIFCLF+G ++N+ +L Q YGLSK A EV
Sbjct: 44 AVSVQLGDLGHLAYSHANQALLRPRSFAAKDDIFCLFEGVLDNLGNLNQQYGLSKGANEV 103
Query: 105 TILIEAYRTLRDRGPLPASQVVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSE 164
++IEAY+TLRDR P PAS ++ L+G + F+L+D + + VA+D +G + +WG+ ++
Sbjct: 104 LLVIEAYKTLRDRAPYPASFMLSQLAGSYAFVLFDKSTSTLLVASDPEGKVSLYWGITAD 163
Query: 165 NHLVFSDNVDLLKASCGNSFAPFPKGCFYTTS---GGLQSFEHPLNELKPVPRVDSQGQM 221
+ FSDN+DLLK SCG S APFP+GCFY+ + GGL+ +E+P +++ VP + ++
Sbjct: 164 GSVAFSDNIDLLKGSCGKSLAPFPQGCFYSNALGVGGLKCYENPKHKVTAVPAKEE--EI 221
Query: 222 CGSNYKVD 229
CG+ +KV+
Sbjct: 222 CGATFKVE 229
>Os04g0679400 Similar to Ripening-associated protein (Fragment)
Length = 180
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 125 VVRDLSGKFTFILYDTLSKSTFVAADADGSIPFFWGVDSENHLVFSDNVDLLKASCGNSF 184
VV+DLSG F F+++D S + F A DG +P +WG+ ++ +V D +++K CG S+
Sbjct: 50 VVKDLSGSFAFVVFDNKSGAVFPALSTDGEVPLYWGIAADGSVVICDEREIVKGGCGKSY 109
Query: 185 APFPKGCFYTTSGGLQSFEHPLNELKPVPRVDSQGQMCGSNYKVDSEAKKDSGIPRVGSA 244
APFP GC + + GGL+SFEHP+N LK +PRVDS+G MCG+ +KVD+ K +S +PRVGSA
Sbjct: 110 APFPVGCMFHSEGGLKSFEHPMNRLKAMPRVDSEGVMCGATFKVDTFTKINS-MPRVGSA 168
Query: 245 AD 246
+
Sbjct: 169 TN 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,943,039
Number of extensions: 302789
Number of successful extensions: 723
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 6
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)