BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0598700 Os03g0598700|AK108026
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0598700 Zinc finger, RING-type domain containing protein 421 e-118
Os11g0629300 Similar to RING-H2 finger protein RHB1a 111 4e-25
Os10g0142100 Zinc finger, RING-type domain containing protein 87 1e-17
Os11g0294600 Zinc finger, RING-type domain containing protein 86 2e-17
Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragm... 83 1e-16
>Os03g0598700 Zinc finger, RING-type domain containing protein
Length = 213
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/213 (95%), Positives = 204/213 (95%)
Query: 1 MGSVLCCLADDGRPVCCFRLPWPIFXXXXXXXXXSGSIARPRADTRVAPDQGRISLTAPS 60
MGSVLCCLADDGRPVCCFRLPWPIF SGSIARPRADTRVAPDQGRISLTAPS
Sbjct: 1 MGSVLCCLADDGRPVCCFRLPWPIFNAAHNHNHNSGSIARPRADTRVAPDQGRISLTAPS 60
Query: 61 QHDSMDTFRCPPRPLPWDDPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISNS 120
QHDSMDTFRCPPRPLPWDDPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISNS
Sbjct: 61 QHDSMDTFRCPPRPLPWDDPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISNS 120
Query: 121 KAVKDDGPSTAVKDDGSSVKHHSDGLHIGKEQVHDLFDFEDDCPICLEEYDYENPKMTLQ 180
KAVKDDGPSTAVKDDGSSVKHHSDGLHIGKEQVHDLFDFEDDCPICLEEYDYENPKMTLQ
Sbjct: 121 KAVKDDGPSTAVKDDGSSVKHHSDGLHIGKEQVHDLFDFEDDCPICLEEYDYENPKMTLQ 180
Query: 181 CNHNFHLCCIYEWMERSQACPVCSKVMLFHEDS 213
CNHNFHLCCIYEWMERSQACPVCSKVMLFHEDS
Sbjct: 181 CNHNFHLCCIYEWMERSQACPVCSKVMLFHEDS 213
>Os11g0629300 Similar to RING-H2 finger protein RHB1a
Length = 220
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 42 RADTRVAPDQGRISLTAPSQHDSMDTFRCPPRPLPWDDPRFSHHTEHHPLVGGHDKASTT 101
RA T A Q + S S DT+R PPRPLP+DDPRFS + LV H + +
Sbjct: 46 RAGTVHAVSQSIEATPVDSSESSFDTYRSPPRPLPYDDPRFSP-PQRDWLVSRHGPSCHS 104
Query: 102 FHKSGSLGESKNADSISNSKAVKDDGPSTAVKDDGSSVKHHSDGLHIGKEQVHDLFDF-- 159
+S L + + + + S K + K SS H G + ++ + F +
Sbjct: 105 PEESEPLRANDDEEMETPSSTHKSSKTNYDTKMKRSSSTH---GEKLPTKEPGNYFTYFS 161
Query: 160 -----EDDCPICLEEYDYENPKMTLQCNHNFHLCCIYEWMERSQACPVCSKVMLFHEDS 213
ED CP CLE+Y ENP++ +QC+H+FHL CIYEWMERS+ACPVC K M F E +
Sbjct: 162 PSAEDEDVCPTCLEDYTSENPRIVMQCSHHFHLGCIYEWMERSEACPVCGKKMEFDETT 220
>Os10g0142100 Zinc finger, RING-type domain containing protein
Length = 156
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 71/145 (48%), Gaps = 35/145 (24%)
Query: 66 DTFRCPPRPLPWDDPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISNSKAVKD 125
DT+R PP PLP+D VG K + K+G + + +
Sbjct: 43 DTYRAPPTPLPYD-------------VGLVLKDNPDLEKTGI------------KRKIHE 77
Query: 126 DGPSTAVKDDGSSVKHHSDGLHIGKEQVHDLFDFEDDCPICLEEYDYENPKMTLQCNHNF 185
S + D+ S K S+ D D ED CPICLEEYD ENP+ +C H+F
Sbjct: 78 HKESLMMDDNESLQKCVSE----------DKPDEEDVCPICLEEYDEENPRSMTKCEHHF 127
Query: 186 HLCCIYEWMERSQACPVCSKVMLFH 210
HLCCI EWMERS+ CPVC ++ + +
Sbjct: 128 HLCCILEWMERSETCPVCDQITMIN 152
>Os11g0294600 Zinc finger, RING-type domain containing protein
Length = 173
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 67/145 (46%), Gaps = 36/145 (24%)
Query: 66 DTFRCPPRPLPWDDPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSI-SNSKAVK 124
DT+R PP PLP+D S +P + D S T + ES D S K V
Sbjct: 59 DTYRAPPAPLPYD---VSLPVPENPDLEKSDLKSKTDDQQE---ESLEVDEFKSCEKCVA 112
Query: 125 DDGPSTAVKDDGSSVKHHSDGLHIGKEQVHDLFDFEDDCPICLEEYDYENPKMTLQCNHN 184
+D P D ED CPICLEEYD ENP+ +C H+
Sbjct: 113 EDKP-----------------------------DEEDVCPICLEEYDAENPRSLTKCEHH 143
Query: 185 FHLCCIYEWMERSQACPVCSKVMLF 209
FHLCCI EWMERS CPVC ++ L
Sbjct: 144 FHLCCILEWMERSDTCPVCDQITLI 168
>Os01g0926200 Similar to RING-H2 finger protein RHF1a (Fragment)
Length = 229
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 49 PDQGRISL--TAPSQHDS----MDTFRCPPRPLPWD-DPRFSHHTEHHPLVGGHDKASTT 101
P QG L T PS + + +T+ RP P+D DPR++ + LV +K S
Sbjct: 55 PAQGAAPLASTNPSTNITDNSLSETYHLVSRPPPYDTDPRYAR-VQREGLVSRREK-SIN 112
Query: 102 FHKSGSLGESKNADSISNSKAVKDDGPSTAVKDDGSSVKHHSDGLH-IGKEQVHDLFDF- 159
+ SL +N S S + + ++ + +G H S+ + + + F
Sbjct: 113 LTQEESLALRRNGSS-SGIEHLAAQKKWSSTEPEGEYKVHRSESTKSLSAKSYNSSFAVV 171
Query: 160 ----EDDCPICLEEYDYENPKMTLQCNHNFHLCCIYEWMERSQACPVCSKVMLFHE 211
ED CP CLEEY +NPK+ +C+H++HL CIYEWMERS CP+C K M F E
Sbjct: 172 TSEDEDVCPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDTCPICGKEMEFCE 227
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,674,077
Number of extensions: 403701
Number of successful extensions: 1401
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 5
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)