BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0565600 Os03g0565600|AK068863
(56 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0565600 Protein of unknown function DUF1084 family pro... 111 1e-25
Os07g0102400 Protein of unknown function DUF1084 family pro... 107 2e-24
Os03g0120300 Protein of unknown function DUF1084 family pro... 83 4e-17
Os10g0537500 Protein of unknown function DUF1084 family pro... 82 1e-16
Os02g0683900 Protein of unknown function DUF1084 family pro... 71 2e-13
>Os03g0565600 Protein of unknown function DUF1084 family protein
Length = 56
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIR 56
VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIR
Sbjct: 1 VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIR 56
>Os07g0102400 Protein of unknown function DUF1084 family protein
Length = 286
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/56 (91%), Positives = 54/56 (96%)
Query: 1 VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIR 56
VA+S+FD D+SLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPI
Sbjct: 231 VAISAFDSDVSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIN 286
>Os03g0120300 Protein of unknown function DUF1084 family protein
Length = 281
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 47/55 (85%)
Query: 1 VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPI 55
+ +++FD + L+VL+HPIL+FFYY+L EI+PSALVLFILRKLPPKR QYHPI
Sbjct: 226 MCLNAFDKEADLDVLNHPILNFFYYLLVEIVPSALVLFILRKLPPKRGITQYHPI 280
>Os10g0537500 Protein of unknown function DUF1084 family protein
Length = 340
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 1 VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPI 55
+ +++FD L+VL+HPIL+FFYY+L EI+PSALVLFILRKLPPKR QYHPI
Sbjct: 285 MCLNTFDKAADLDVLNHPILNFFYYLLVEIVPSALVLFILRKLPPKRGITQYHPI 339
>Os02g0683900 Protein of unknown function DUF1084 family protein
Length = 284
Score = 71.2 bits (173), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 1 VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPI 55
+ +FD L+VLDHPIL+F YY++ EILPS+LVLFILR++P K AQYHP+
Sbjct: 227 MCFDAFDKKADLDVLDHPILNFIYYLIVEILPSSLVLFILRRIPSKLRLAQYHPL 281
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.146 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,921,891
Number of extensions: 54199
Number of successful extensions: 164
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 5
Length of query: 56
Length of database: 17,035,801
Length adjustment: 29
Effective length of query: 27
Effective length of database: 15,521,595
Effective search space: 419083065
Effective search space used: 419083065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)