Os03g0565600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1084 family protein.
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Os03g0565600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1084 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.06 | 0.349 | 10.8 | -0.398 | 1.64 | -0.514 | 0.734 | -0.0813 | 0.0998 | 22.7 | 68.7 | 1239 | -- | -- |
| 55.07 | 0.346 | 10.8 | -0.39 | 1.64 | -0.519 | 0.721 | -- | 0.102 | 22.7 | 68.79 | 1238 | -- | -- |
| 57.19 | 0.352 | 10.8 | -0.401 | 1.64 | -0.515 | -- | 0.158 | 0.105 | 22.7 | 68.02 | 1234 | -- | -- |
| 57.23 | 0.352 | 10.8 | -0.422 | 1.64 | -0.503 | -- | -- | 0.0996 | 22.7 | 68 | 1238 | -- | -- |
| 172.65 | 0.615 | 10.7 | -0.494 | -- | -0.586 | -- | -0.439 | 0.0988 | -- | 81 | 2288 | -- | -- |
| 64.96 | 0.378 | 10.8 | -0.502 | 1.55 | -- | 0.627 | -- | 0.0996 | 22.6 | -- | -- | -- | -- |
| 66.58 | 0.382 | 10.8 | -0.527 | 1.54 | -- | -- | -- | 0.0977 | 22.6 | -- | -- | -- | -- |
| 173.94 | 0.617 | 10.7 | -0.483 | -- | -0.587 | -- | -- | 0.101 | -- | 81 | 2288 | -- | -- |
| 61.77 | 0.366 | 10.8 | -- | 1.65 | -0.565 | -- | -- | 0.145 | 22.7 | 68.99 | 1238 | -- | -- |
| 213.23 | 0.682 | 10.7 | -0.499 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 73.91 | 0.402 | 10.8 | -- | 1.54 | -- | -- | -- | 0.156 | 22.6 | -- | -- | -- | -- |
| 180.1 | 0.627 | 10.7 | -- | -- | -0.59 | -- | -- | 0.155 | -- | 81 | 2288 | -- | -- |
| 219.8 | 0.692 | 10.7 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.59 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 2 | 54.15 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 3 | 54.17 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 9 | 54.50 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |
| 10 | 54.52 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 25 | 54.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 34 | 55.12 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 39 | 55.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 40 | 55.17 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 42 | 55.21 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 50 | 55.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 67 | 55.42 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 75 | 55.48 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 85 | 55.51 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 87 | 55.53 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 95 | 55.55 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 100 | 55.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 110 | 55.60 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 126 | 55.62 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 140 | 55.67 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 146 | 55.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 149 | 55.70 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 175 | 55.72 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 180 | 55.74 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 3 |
| 195 | 55.78 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 239 | 55.90 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 307 | 55.90 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 325 | 55.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 341 | 55.95 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 366 | 55.98 | humidity | 70 | 1440 | < th | dose independent | sin | 20 | NA |
| 370 | 55.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 391 | 56.00 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 394 | 56.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 396 | 56.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 413 | 56.02 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 440 | 56.02 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 442 | 56.03 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 472 | 56.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 504 | 56.06 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 521 | 56.08 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 536 | 56.10 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 14 |
| 545 | 56.12 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 12 |
| 590 | 56.16 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 608 | 56.18 | humidity | 70 | 1440 | > th | dose independent | sin | 21 | NA |
| 688 | 56.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 692 | 56.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 697 | 56.24 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 708 | 56.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 21 |
| 709 | 56.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 710 | 56.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 728 | 56.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 19 |
| 813 | 56.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 886 | 56.32 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 990 | 56.38 | humidity | 70 | 1440 | > th | dose independent | sin | 9 | NA |
| 996 | 56.38 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 4 |