BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0565600 Os03g0565600|AK068863
         (56 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21790.1  | chr4:11569924-11572163 FORWARD LENGTH=292           96   4e-21
AT2G02180.1  | chr2:560976-562961 FORWARD LENGTH=304               81   9e-17
AT1G14530.1  | chr1:4971420-4973597 REVERSE LENGTH=294             66   4e-12

>AT4G21790.1 | chr4:11569924-11572163 FORWARD LENGTH=292
          Length = 291

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 52/56 (92%)

Query: 1   VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIR 56
           VA+S+FD DL+L+VLDHP+L+  YYM+ E+LPSALVLFILRKLPPKRVSAQYHPI+
Sbjct: 236 VAVSAFDKDLTLDVLDHPVLNLIYYMVVEVLPSALVLFILRKLPPKRVSAQYHPIQ 291



>AT2G02180.1 | chr2:560976-562961 FORWARD LENGTH=304
          Length = 303

 Score = 81.3 bits (199), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 44/55 (80%)

Query: 2   AMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIR 56
             ++FD   +L+VLDHPIL+F YY+L EILPS+LVLFILRKLPPKR   QYH IR
Sbjct: 249 CFAAFDEGANLDVLDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIR 303



>AT1G14530.1 | chr1:4971420-4973597 REVERSE LENGTH=294
          Length = 293

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 17  HPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPIR 56
           HPIL+F YY+L EILPS+LVLFILRKLPPKR   QYH I+
Sbjct: 254 HPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.146    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,221,803
Number of extensions: 34804
Number of successful extensions: 106
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 11,106,569
Length adjustment: 29
Effective length of query: 27
Effective length of database: 10,311,505
Effective search space: 278410635
Effective search space used: 278410635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)