BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0425600 Os03g0425600|Os03g0425600
(465 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0425600 Similar to UDP-glucose dehydrogenase 950 0.0
Os12g0443500 Similar to UDP-glucose 6-dehydrogenase (EC 1.1... 848 0.0
Os03g0757900 Similar to UDP-glucose 6-dehydrogenase (EC 1.1... 847 0.0
Os12g0443600 Similar to UDP-glucose 6-dehydrogenase (EC 1.1... 843 0.0
Os03g0604200 Similar to UDP-glucose dehydrogenase 817 0.0
Os04g0581600 Similar to UDP-glucose dehydrogenase 140 2e-33
Os03g0147150 132 4e-31
>Os03g0425600 Similar to UDP-glucose dehydrogenase
Length = 465
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/465 (100%), Positives = 465/465 (100%)
Query: 1 MAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHV 60
MAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHV
Sbjct: 1 MAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHV 60
Query: 61 GEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEA 120
GEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEA
Sbjct: 61 GEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEA 120
Query: 121 IEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVY 180
IEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVY
Sbjct: 121 IEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVY 180
Query: 181 TRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDS 240
TRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDS
Sbjct: 181 TRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDS 240
Query: 241 RIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 300
RIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV
Sbjct: 241 RIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 300
Query: 301 SSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRD 360
SSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRD
Sbjct: 301 SSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRD 360
Query: 361 LAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYG 420
LAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYG
Sbjct: 361 LAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYG 420
Query: 421 GMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 465
GMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA
Sbjct: 421 GMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 465
>Os12g0443500 Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc
dehydrogenase) (UDP-GlcDH) (UDPGDH)
Length = 480
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/465 (86%), Positives = 434/465 (93%), Gaps = 1/465 (0%)
Query: 1 MAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHV 60
MAVIALKCP +EVVVVDIS RIDAWNS+ LPIYEPGLD+VV+ CRGRNLFFS+DVE+HV
Sbjct: 17 MAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKECRGRNLFFSTDVEKHV 76
Query: 61 GEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEA 120
EA+I+FVSVNTPTK RGLGAGKAADLTYWESAARMIA V+ SDK+VVEKSTVPVKTAEA
Sbjct: 77 AEANIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136
Query: 121 IEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVY 180
IEKIL HN + G+ +QILSNPEFLAEGTAI DL PDRVLIGGRET G+ AVQALK+VY
Sbjct: 137 IEKILTHNSK-GINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVY 195
Query: 181 TRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDS 240
WVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNA+SALCEATGA+VAEVAY+VGKDS
Sbjct: 196 AHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVAEVAYSVGKDS 255
Query: 241 RIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 300
RIG KFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV
Sbjct: 256 RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 315
Query: 301 SSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRD 360
SSMFNTV+GKKIAVLGFAFKKDTGDTRETPAIDVC GL+GDKA++SIYDPQVTEDQ+QRD
Sbjct: 316 SSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRD 375
Query: 361 LAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYG 420
LAMSKFDWDHP+HLQP SPTA KQVSV WDAYEA + AHGVCILTEWDEF++LDY +I+
Sbjct: 376 LAMSKFDWDHPMHLQPTSPTAFKQVSVVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFD 435
Query: 421 GMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 465
MQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA
Sbjct: 436 NMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 480
>Os03g0757900 Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc
dehydrogenase) (UDP-GlcDH) (UDPGDH)
Length = 480
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/465 (86%), Positives = 431/465 (92%), Gaps = 1/465 (0%)
Query: 1 MAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHV 60
MAVIALKCP +EVVVVDIS RIDAWNS+ LPIYEPGLD+VV+ CRGRNLFFS+DVE+HV
Sbjct: 17 MAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKECRGRNLFFSTDVEKHV 76
Query: 61 GEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEA 120
EADI+FVSVNTPTK RGLGAGKAADLTYWESAARMIA V+ SDK+VVEKSTVPVKTAEA
Sbjct: 77 AEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136
Query: 121 IEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVY 180
IEKIL HN + G+ +QILSNPEFLAEGTAI DL PDRVLIGGRETA GR AVQALK VY
Sbjct: 137 IEKILTHNSK-GINYQILSNPEFLAEGTAIDDLFKPDRVLIGGRETAEGRKAVQALKSVY 195
Query: 181 TRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDS 240
WVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNA+SALCEATGA+V EVAYAVGKDS
Sbjct: 196 AHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVTEVAYAVGKDS 255
Query: 241 RIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 300
RIG KFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV
Sbjct: 256 RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 315
Query: 301 SSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRD 360
SSMFNTV+GKKIAVLGFAFKKDTGDTRETPAIDVC GL+GDKA++SIYDPQVTEDQ+QRD
Sbjct: 316 SSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRD 375
Query: 361 LAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYG 420
LAM KFDWDHP+HLQP SPTA KQVSV WDAYEA + AHG+CILTEWDEF++LDY +IY
Sbjct: 376 LAMGKFDWDHPMHLQPTSPTAFKQVSVVWDAYEATKNAHGLCILTEWDEFKTLDYQKIYD 435
Query: 421 GMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 465
MQKPAFVFDGRNVVD EKLREIGFIVYSIGKPLDAWLKDMPAVA
Sbjct: 436 NMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA 480
>Os12g0443600 Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc
dehydrogenase) (UDP-GlcDH) (UDPGDH)
Length = 480
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/465 (85%), Positives = 432/465 (92%), Gaps = 1/465 (0%)
Query: 1 MAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHV 60
MAVIALKCP +EVVVVDIS R+DAWNSD LPIYEPGLD+VV+ CRGRNLFFS+DVE+HV
Sbjct: 17 MAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHV 76
Query: 61 GEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEA 120
EADI+FVSVNTPTK RGLGAGKAADLTYWESAARMIA V+ SDK+VVEKSTVPVKTAEA
Sbjct: 77 AEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136
Query: 121 IEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVY 180
IEKIL HN + G+ +QILSNPEFLAEGTAI DL PDRVLIGGRET G+ AVQALK+VY
Sbjct: 137 IEKILTHNSK-GINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVY 195
Query: 181 TRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDS 240
WVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNA+SALCEATGA+V+EVAYAVGKD+
Sbjct: 196 AHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDT 255
Query: 241 RIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 300
RIG KFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV
Sbjct: 256 RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVV 315
Query: 301 SSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRD 360
+SMFNTV+GKKIAVLGFAFKKDTGDTRETPAIDVC GL+GDKA++SIYDPQVTEDQ+QRD
Sbjct: 316 ASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRD 375
Query: 361 LAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYG 420
L+M+KFDWDHP HLQP SPTA KQVSV WDAYEA + AHG+CILTEWDEF++LDY RI+
Sbjct: 376 LSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFD 435
Query: 421 GMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 465
MQKPAFVFDGRNVVD EKLREIGFIVYSIGKPLDAWLKDMPAVA
Sbjct: 436 NMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA 480
>Os03g0604200 Similar to UDP-glucose dehydrogenase
Length = 482
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/466 (83%), Positives = 427/466 (91%), Gaps = 1/466 (0%)
Query: 1 MAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHV 60
MAVIALKCPDVEVVVVDISA RI+ WNS+ LPIYEPGLDDVVR+CRGRNLFFS+DVERHV
Sbjct: 17 MAVIALKCPDVEVVVVDISAPRIEGWNSERLPIYEPGLDDVVRQCRGRNLFFSTDVERHV 76
Query: 61 GEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEA 120
+A IVFVSVNTPTK RGLGAGKAADLTYWESAAR+IA V+ SDK+VVEKSTVPVKTAEA
Sbjct: 77 ADAGIVFVSVNTPTKTRGLGAGKAADLTYWESAARIIADVSRSDKIVVEKSTVPVKTAEA 136
Query: 121 IEKILDHNGRDG-VGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDV 179
IEKIL HN + G + +QILSNPEFLAEGTAI+DL +PDRVLIGGRET GRAAV ALK +
Sbjct: 137 IEKILAHNSKGGNIRYQILSNPEFLAEGTAIQDLFSPDRVLIGGRETPEGRAAVAALKSI 196
Query: 180 YTRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKD 239
Y RWVP++RI+TTNLWSAELSKLAANAFLAQRISSVNA+SALCEATGADV EVA ++GKD
Sbjct: 197 YARWVPDDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGADVTEVANSIGKD 256
Query: 240 SRIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRV 299
SRIG +FL+ASVGFGGSCFQKDILNLVYICEC GLPEVANYW QVI+INDYQKSRFVNRV
Sbjct: 257 SRIGPRFLSASVGFGGSCFQKDILNLVYICECYGLPEVANYWHQVIRINDYQKSRFVNRV 316
Query: 300 VSSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQR 359
VSSMFNTVAGKK+AVLGFAFKKDTGDTRETPAIDVCKGL+GDKA VSIYDPQVTE+QVQR
Sbjct: 317 VSSMFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKAVVSIYDPQVTEEQVQR 376
Query: 360 DLAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIY 419
DL M+KFDWDHP HLQPMSP++ K V+V+WDAYEAAR AH VCILTEWDEFR LDY R+Y
Sbjct: 377 DLVMNKFDWDHPRHLQPMSPSSAKHVAVSWDAYEAARGAHAVCILTEWDEFRRLDYQRMY 436
Query: 420 GGMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 465
M KPAF+FDGRNVVD +KLR IGF+VYSIGKPLD WL+DMPAVA
Sbjct: 437 DAMHKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMPAVA 482
>Os04g0581600 Similar to UDP-glucose dehydrogenase
Length = 219
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 105/167 (62%), Gaps = 10/167 (5%)
Query: 86 DLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEAIEKILDHNGRDGVGFQILSNPEFLA 145
DL YWESAARMI + S KVVVEKSTVP + S+
Sbjct: 20 DLAYWESAARMIVDASRSGKVVVEKSTVPSGRPRPSRRSSRTTPMSS------SSRCSPT 73
Query: 146 EGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVYTRWVPEERILTTNLWSAELSKLAAN 205
+ R + VLIGGR+TAA VQALKD+Y +WVP +RI+TTNLWSAELSKLA N
Sbjct: 74 RSSWRRSRPSLTCVLIGGRDTAA----VQALKDMYAQWVPVDRIVTTNLWSAELSKLAVN 129
Query: 206 AFLAQRISSVNAMSALCEATGADVAEVAYAVGKDSRIGAKFLNASVG 252
AFLAQR+SSVNA+SALCEATGAD+ EVA + +++ + ASVG
Sbjct: 130 AFLAQRVSSVNAISALCEATGADITEVATGAAQRAQVQLRRATASVG 176
>Os03g0147150
Length = 179
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 89/149 (59%), Gaps = 41/149 (27%)
Query: 96 MIAAVATSDKVVVEKSTVPVKTAEAIEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLA 155
MIA + S KVVVEKSTVPVKTAEAIEKIL HN EF
Sbjct: 1 MIADSSRSSKVVVEKSTVPVKTAEAIEKILAHNAH---------VVEF------------ 39
Query: 156 PDRVLIGGRETAAGRAAVQALKDVYTRWVPEERILTTNLWSAELSKLAANAFLAQRISSV 215
QALKDVY +WVP +RI+TTNLWSAELSKLA NAFL QR+SSV
Sbjct: 40 ------------------QALKDVYAQWVPVDRIITTNLWSAELSKLAVNAFLVQRVSSV 81
Query: 216 NAMSALCEATGADVAEVAYAVGKDSRIGA 244
NA+SALCEATG DV EV A G R+GA
Sbjct: 82 NAISALCEATGTDVMEV--ATGAAQRLGA 108
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,203,028
Number of extensions: 611495
Number of successful extensions: 1299
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 7
Length of query: 465
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 361
Effective length of database: 11,605,545
Effective search space: 4189601745
Effective search space used: 4189601745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)