FiT-DB / Search/ Help/ Sample detail

Os03g0757900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.74 (0.0315) R2 : 0.281
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.25 (0.0966) R2dE : 0.302 R2E : 0.274
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.0699) R2dN8 : 0.00698 R2N8 : -0.0205
σ : 0.581
deviance : 155.81
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.063
memory length : 36133
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.8 0.563 9.71 1.07 0.29 -1.41 -0.2 -1.17 0.0715 7.61 1.799 5805 -- --
145.09 0.561 9.74 0.836 0.294 -1.24 -0.192 -- 0.0219 7.5 1.882 5808 -- --
143.9 0.559 9.71 1.07 0.29 -1.42 -- -1.19 0.0718 7.69 1.743 5806 -- --
141.87 0.555 9.74 0.863 0.294 -1.45 -- -- -0.0114 7.52 1.899 8697 -- --
147.58 0.566 9.72 1.02 -- -1.43 -- -1.02 0.0781 -- 1.572 10161 -- --
170.11 0.611 9.68 1.22 0.319 -- -0.15 -- 0.283 8.08 -- -- -- --
170.18 0.611 9.68 1.22 0.319 -- -- -- 0.283 8.15 -- -- -- --
146.64 0.564 9.74 0.875 -- -1.46 -- -- -0.00202 -- 1.916 8706 -- --
149.68 0.57 9.75 -- 0.422 -1.37 -- -- -0.176 7.3 1.139 38022 -- --
175.78 0.62 9.69 1.22 -- -- -- -- 0.287 -- -- -- -- --
209.17 0.677 9.71 -- 0.327 -- -- -- 0.148 7.88 -- -- -- --
155.81 0.581 9.74 -- -- -1.25 -- -- -0.111 -- 1.063 36133 -- --
214.98 0.684 9.72 -- -- -- -- -- 0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.71 radiation 1 4320 > th dose independent rect. 18 11
2 135.78 radiation 1 4320 < th dose independent rect. 18 11
4 135.91 radiation 1 4320 > th dose independent rect. 18 1
15 136.05 radiation 1 4320 < th dose independent rect. 18 8
18 136.08 radiation 10 4320 < th dose independent rect. 17 1
21 136.13 radiation 40 4320 < th dose independent rect. 19 14
24 136.22 radiation 1 4320 < th dose independent rect. 18 5
28 136.25 radiation 40 4320 < th dose independent rect. 22 11
30 136.29 radiation 40 4320 < th dose independent rect. 7 2
31 136.29 radiation 40 4320 < th dose independent rect. 24 9
39 136.35 radiation 40 4320 < th dose independent rect. 17 16
44 136.40 radiation 20 4320 < th dose dependent rect. 18 11
55 136.78 radiation 1 4320 > th dose dependent rect. 18 11
57 137.10 humidity 80 43200 > th dose dependent rect. 9 1
58 137.29 radiation 1 4320 > th dose independent rect. 18 16
59 137.34 radiation 1 4320 < th dose independent rect. 18 16
60 137.37 wind 9 43200 > th dose dependent rect. 18 2
63 137.65 radiation 20 4320 < th dose independent rect. 17 15
64 137.66 radiation 1 4320 > th dose dependent rect. 18 1
74 137.69 radiation 20 4320 < th dose independent rect. 19 13
76 137.70 radiation 20 4320 < th dose independent rect. 2 6
78 137.71 radiation 20 4320 < th dose independent rect. 22 10
84 137.75 radiation 20 4320 < th dose independent rect. 4 4
95 138.11 humidity 90 14400 > th dose independent rect. 1 7
97 138.14 wind 9 43200 > th dose independent rect. 18 2
99 138.18 humidity 90 14400 > th dose dependent rect. 24 14
103 138.23 humidity 90 43200 < th dose independent rect. 8 1
140 138.52 humidity 80 43200 > th dose independent rect. 10 1
147 138.64 wind 9 43200 < th dose independent rect. 18 2
152 138.68 humidity 80 43200 < th dose independent rect. 10 1
162 138.77 radiation 10 4320 > th dose dependent rect. 7 1
179 138.80 radiation 30 14400 > th dose independent rect. 7 1
206 138.91 humidity 90 14400 > th dose dependent sin 6 NA
207 138.91 radiation 10 4320 < th dose dependent rect. 18 2
221 138.97 radiation 10 4320 < th dose dependent rect. 18 5
222 138.98 radiation 1 14400 > th dose independent rect. 7 1
223 138.98 humidity 90 14400 > th dose independent rect. 5 2
230 139.04 radiation 1 14400 < th dose independent rect. 7 1
235 139.05 radiation 30 4320 > th dose dependent rect. 16 17
237 139.06 radiation 1 4320 < th dose dependent rect. 18 16
238 139.08 humidity 90 43200 < th dose independent rect. 6 4
243 139.10 wind 3 43200 < th dose independent rect. 10 3
260 139.13 humidity 90 14400 > th dose dependent rect. 3 5
274 139.20 humidity 90 43200 > th dose independent rect. 8 1
305 139.31 wind 3 43200 > th dose independent rect. 10 3
308 139.34 wind 3 43200 > th dose independent rect. 11 1
317 139.37 humidity 90 14400 > th dose dependent rect. 5 2
328 139.40 atmosphere 1005 43200 > th dose independent rect. 1 1
358 139.48 wind 3 43200 < th dose independent rect. 11 1
377 139.49 humidity 90 14400 < th dose independent rect. 23 10
381 139.51 humidity 90 43200 < th dose independent rect. 6 10
410 139.56 humidity 90 14400 > th dose dependent rect. 24 2
449 139.69 wind 1 43200 > th dose dependent rect. 10 2
463 139.76 radiation 1 14400 < th dose dependent rect. 7 1
467 139.79 wind 9 43200 < th dose dependent rect. 10 2
469 139.81 wind 5 43200 < th dose dependent rect. 10 2
475 139.83 radiation 40 4320 < th dose independent sin 12 NA
510 139.96 atmosphere 1005 43200 < th dose independent rect. 1 1
548 140.03 wind 7 43200 > th dose independent rect. 9 2
587 140.24 wind 7 43200 > th dose independent rect. 23 13
591 140.25 humidity 90 43200 > th dose independent rect. 7 8
596 140.26 humidity 90 43200 > th dose independent rect. 6 10
610 140.29 wind 7 43200 < th dose independent rect. 23 14
618 140.32 wind 7 43200 < th dose independent rect. 9 2
625 140.34 atmosphere 1005 43200 < th dose independent rect. 1 3
626 140.34 wind 7 43200 > th dose independent rect. 3 9
645 140.40 radiation 1 14400 < th dose independent rect. 7 5
664 140.43 radiation 1 14400 > th dose independent rect. 7 5
665 140.43 wind 7 43200 < th dose independent rect. 3 9
670 140.44 atmosphere 1005 43200 > th dose independent rect. 1 3
680 140.46 humidity 90 14400 > th dose independent sin 7 NA
681 140.46 atmosphere 1005 43200 < th dose independent rect. 3 1
687 140.47 radiation 1 4320 < th dose dependent rect. 3 7
691 140.48 humidity 90 14400 > th dose dependent rect. 22 6
706 140.50 wind 7 43200 > th dose independent rect. 7 5
707 140.50 radiation 1 14400 < th dose independent rect. 24 9
716 140.50 radiation 1 4320 < th dose dependent rect. 22 12
721 140.51 wind 3 43200 > th dose dependent rect. 5 1
722 140.51 radiation 40 4320 < th dose dependent rect. 7 1
751 140.54 radiation 1 14400 < th dose independent rect. 5 7
754 140.55 radiation 1 14400 > th dose independent rect. 5 7
758 140.56 wind 7 43200 < th dose independent rect. 7 5
782 140.62 temperature 15 43200 > th dose independent rect. 5 1
787 140.63 atmosphere 1005 43200 > th dose independent rect. 19 1
814 140.69 radiation 1 14400 < th dose independent sin 9 NA
821 140.70 atmosphere 1005 43200 > th dose independent rect. 3 1
825 140.70 radiation 1 14400 < th dose independent rect. 22 14
831 140.71 radiation 1 14400 < th dose independent rect. 24 12
865 140.74 wind 3 43200 < th dose dependent rect. 3 2
868 140.74 humidity 90 14400 > th dose dependent rect. 13 18
875 140.75 humidity 60 43200 < th dose independent rect. 14 10
879 140.76 radiation 1 14400 < th dose dependent rect. 4 4
941 140.82 humidity 60 43200 > th dose independent rect. 14 10
993 140.87 radiation 1 14400 < th dose dependent sin 8 NA
997 140.88 radiation 1 14400 > th dose independent sin 8 NA